Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3983 and Shewana3_3984 are separated by 178 nucleotides Shewana3_3984 and Shewana3_3985 are separated by 222 nucleotides
Shewana3_3983: Shewana3_3983 - CzcA family heavy metal efflux protein (RefSeq), at 4,779,996 to 4,783,133
_3983
Shewana3_3984: Shewana3_3984 - ribonuclease T2 (RefSeq), at 4,783,312 to 4,784,469
_3984
Shewana3_3985: Shewana3_3985 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,784,692 to 4,786,653
_3985
Position (kb)
4783
4784
4785 Strain fitness (log2 ratio)
-2
-1
0
1 at 4782.431 kb on + strand, within Shewana3_3983 at 4782.431 kb on + strand, within Shewana3_3983 at 4782.439 kb on - strand, within Shewana3_3983 at 4782.591 kb on - strand, within Shewana3_3983 at 4782.688 kb on + strand, within Shewana3_3983 at 4782.885 kb on + strand at 4783.049 kb on + strand at 4783.089 kb on - strand at 4783.094 kb on - strand at 4783.128 kb on + strand at 4783.187 kb on - strand at 4783.326 kb on - strand at 4783.579 kb on - strand, within Shewana3_3984 at 4783.635 kb on + strand, within Shewana3_3984 at 4783.869 kb on - strand, within Shewana3_3984 at 4783.928 kb on + strand, within Shewana3_3984 at 4783.936 kb on - strand, within Shewana3_3984 at 4784.040 kb on + strand, within Shewana3_3984 at 4784.110 kb on - strand, within Shewana3_3984 at 4784.110 kb on - strand, within Shewana3_3984 at 4784.146 kb on - strand, within Shewana3_3984 at 4784.304 kb on + strand, within Shewana3_3984 at 4784.314 kb on + strand, within Shewana3_3984 at 4784.315 kb on + strand, within Shewana3_3984 at 4784.315 kb on + strand, within Shewana3_3984 at 4784.322 kb on - strand, within Shewana3_3984 at 4784.357 kb on + strand at 4784.365 kb on - strand at 4784.543 kb on - strand at 4784.669 kb on - strand at 4784.720 kb on + strand at 4784.776 kb on + strand at 4784.786 kb on + strand at 4784.817 kb on - strand at 4785.218 kb on + strand, within Shewana3_3985 at 4785.399 kb on + strand, within Shewana3_3985
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,782,431 + Shewana3_3983 0.78 +0.3 4,782,431 + Shewana3_3983 0.78 -0.2 4,782,439 - Shewana3_3983 0.78 +1.7 4,782,591 - Shewana3_3983 0.83 -0.3 4,782,688 + Shewana3_3983 0.86 +0.3 4,782,885 + +0.1 4,783,049 + +0.2 4,783,089 - -0.4 4,783,094 - -0.9 4,783,128 + -0.3 4,783,187 - +0.6 4,783,326 - +0.4 4,783,579 - Shewana3_3984 0.23 -0.3 4,783,635 + Shewana3_3984 0.28 -0.6 4,783,869 - Shewana3_3984 0.48 -0.2 4,783,928 + Shewana3_3984 0.53 +0.6 4,783,936 - Shewana3_3984 0.54 +0.1 4,784,040 + Shewana3_3984 0.63 +0.4 4,784,110 - Shewana3_3984 0.69 -0.3 4,784,110 - Shewana3_3984 0.69 -0.1 4,784,146 - Shewana3_3984 0.72 -0.9 4,784,304 + Shewana3_3984 0.86 +0.9 4,784,314 + Shewana3_3984 0.87 +0.7 4,784,315 + Shewana3_3984 0.87 +0.4 4,784,315 + Shewana3_3984 0.87 +0.6 4,784,322 - Shewana3_3984 0.87 +0.2 4,784,357 + +0.6 4,784,365 - -0.5 4,784,543 - +1.0 4,784,669 - +0.3 4,784,720 + -0.3 4,784,776 + -2.3 4,784,786 + -1.0 4,784,817 - +0.2 4,785,218 + Shewana3_3985 0.27 +0.1 4,785,399 + Shewana3_3985 0.36 +0.3
Or see this region's nucleotide sequence