Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3934

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3933 and Shewana3_3934 are separated by 197 nucleotidesShewana3_3934 and Shewana3_3935 are separated by 253 nucleotidesShewana3_3935 and Shewana3_3936 are separated by 431 nucleotides Shewana3_3933: Shewana3_3933 - hypothetical protein (RefSeq), at 4,727,066 to 4,727,920 _3933 Shewana3_3934: Shewana3_3934 - RNA methyltransferase (RefSeq), at 4,728,118 to 4,728,582 _3934 Shewana3_3935: Shewana3_3935 - hypothetical protein (RefSeq), at 4,728,836 to 4,729,150 _3935 Shewana3_3936: Shewana3_3936 - hypothetical protein (RefSeq), at 4,729,582 to 4,731,465 _3936 Position (kb) 4728 4729Strain fitness (log2 ratio) -1 0 1 2at 4727.165 kb on + strand, within Shewana3_3933at 4727.375 kb on - strand, within Shewana3_3933at 4727.396 kb on + strand, within Shewana3_3933at 4727.404 kb on - strand, within Shewana3_3933at 4727.501 kb on - strand, within Shewana3_3933at 4727.524 kb on - strand, within Shewana3_3933at 4727.832 kb on - strand, within Shewana3_3933at 4727.888 kb on - strandat 4727.984 kb on + strandat 4728.027 kb on + strandat 4728.267 kb on - strand, within Shewana3_3934at 4728.338 kb on + strand, within Shewana3_3934at 4728.348 kb on + strand, within Shewana3_3934at 4728.506 kb on + strand, within Shewana3_3934at 4728.506 kb on + strand, within Shewana3_3934at 4728.514 kb on - strand, within Shewana3_3934at 4728.514 kb on - strand, within Shewana3_3934at 4728.516 kb on + strand, within Shewana3_3934at 4728.516 kb on + strand, within Shewana3_3934at 4728.524 kb on - strand, within Shewana3_3934at 4728.610 kb on - strandat 4728.784 kb on - strandat 4728.931 kb on + strand, within Shewana3_3935at 4728.939 kb on - strand, within Shewana3_3935at 4728.963 kb on - strand, within Shewana3_3935at 4728.963 kb on - strand, within Shewana3_3935at 4728.974 kb on + strand, within Shewana3_3935at 4729.031 kb on - strand, within Shewana3_3935at 4729.135 kb on + strandat 4729.260 kb on - strandat 4729.355 kb on - strandat 4729.355 kb on - strandat 4729.355 kb on - strandat 4729.355 kb on - strandat 4729.355 kb on - strandat 4729.508 kb on + strandat 4729.518 kb on + strandat 4729.527 kb on + strandat 4729.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,727,165 + Shewana3_3933 0.12 -1.2
4,727,375 - Shewana3_3933 0.36 +0.2
4,727,396 + Shewana3_3933 0.39 -1.4
4,727,404 - Shewana3_3933 0.40 -0.4
4,727,501 - Shewana3_3933 0.51 +0.6
4,727,524 - Shewana3_3933 0.54 +0.3
4,727,832 - Shewana3_3933 0.90 +0.9
4,727,888 - +2.0
4,727,984 + -0.6
4,728,027 + -0.9
4,728,267 - Shewana3_3934 0.32 -1.7
4,728,338 + Shewana3_3934 0.47 -0.3
4,728,348 + Shewana3_3934 0.49 +0.7
4,728,506 + Shewana3_3934 0.83 +0.3
4,728,506 + Shewana3_3934 0.83 +0.3
4,728,514 - Shewana3_3934 0.85 -1.0
4,728,514 - Shewana3_3934 0.85 -1.6
4,728,516 + Shewana3_3934 0.86 +0.3
4,728,516 + Shewana3_3934 0.86 +0.3
4,728,524 - Shewana3_3934 0.87 -0.7
4,728,610 - -1.2
4,728,784 - +0.1
4,728,931 + Shewana3_3935 0.30 -1.1
4,728,939 - Shewana3_3935 0.33 +0.1
4,728,963 - Shewana3_3935 0.40 +0.7
4,728,963 - Shewana3_3935 0.40 +0.6
4,728,974 + Shewana3_3935 0.44 -0.5
4,729,031 - Shewana3_3935 0.62 +0.0
4,729,135 + -0.5
4,729,260 - +0.5
4,729,355 - +0.5
4,729,355 - +0.4
4,729,355 - +0.6
4,729,355 - +0.3
4,729,355 - +0.7
4,729,508 + -0.3
4,729,518 + -0.1
4,729,527 + -1.3
4,729,528 + -0.0

Or see this region's nucleotide sequence