Strain Fitness in Shewanella sp. ANA-3 around Shewana3_R0140

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0139 and Shewana3_R0140 are separated by 297 nucleotidesShewana3_R0140 and Shewana3_3909 are separated by 712 nucleotides Shewana3_R0139: Shewana3_R0139 - 23S ribosomal RNA (RefSeq), at 4,692,306 to 4,695,200 _R0139 Shewana3_R0140: Shewana3_R0140 - 16S ribosomal RNA (RefSeq), at 4,695,498 to 4,697,052 _R0140 Shewana3_3909: Shewana3_3909 - DNA binding domain-containing protein (RefSeq), at 4,697,765 to 4,698,670 _3909 Position (kb) 4695 4696 4697 4698Strain fitness (log2 ratio) -2 -1 0 1at 4697.540 kb on + strandat 4697.615 kb on + strandat 4697.683 kb on + strandat 4697.689 kb on - strandat 4697.711 kb on - strandat 4697.730 kb on + strandat 4697.730 kb on + strandat 4697.738 kb on - strandat 4697.738 kb on - strandat 4697.756 kb on + strandat 4697.772 kb on + strandat 4697.811 kb on - strandat 4697.854 kb on + strandat 4697.895 kb on - strand, within Shewana3_3909at 4697.942 kb on + strand, within Shewana3_3909

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,697,540 + -0.3
4,697,615 + -2.3
4,697,683 + +0.8
4,697,689 - -2.5
4,697,711 - -2.6
4,697,730 + -0.4
4,697,730 + -1.9
4,697,738 - +0.3
4,697,738 - +0.2
4,697,756 + -0.8
4,697,772 + -1.0
4,697,811 - +0.2
4,697,854 + -1.7
4,697,895 - Shewana3_3909 0.14 +0.4
4,697,942 + Shewana3_3909 0.20 -0.8

Or see this region's nucleotide sequence