Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3878 and rnpB are separated by 131 nucleotides rnpB and Shewana3_3879 are separated by 113 nucleotides Shewana3_3879 and Shewana3_3880 are separated by 88 nucleotides
Shewana3_3878: Shewana3_3878 - hypothetical protein (RefSeq), at 4,658,311 to 4,658,817
_3878
Shewana3_R0137: rnpB - RNA component of RNaseP (NCBI), at 4,658,949 to 4,659,248
rnpB
Shewana3_3879: Shewana3_3879 - hypothetical protein (RefSeq), at 4,659,362 to 4,660,207
_3879
Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179
_3880
Position (kb)
4659
4660
4661 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4658.452 kb on + strand, within Shewana3_3878 at 4658.470 kb on + strand, within Shewana3_3878 at 4658.484 kb on - strand, within Shewana3_3878 at 4658.551 kb on + strand, within Shewana3_3878 at 4658.871 kb on + strand at 4659.339 kb on - strand at 4659.392 kb on - strand at 4659.454 kb on + strand, within Shewana3_3879 at 4659.562 kb on + strand, within Shewana3_3879 at 4659.668 kb on + strand, within Shewana3_3879 at 4659.697 kb on - strand, within Shewana3_3879 at 4659.748 kb on + strand, within Shewana3_3879 at 4659.800 kb on - strand, within Shewana3_3879 at 4659.924 kb on - strand, within Shewana3_3879 at 4660.021 kb on + strand, within Shewana3_3879 at 4660.029 kb on - strand, within Shewana3_3879 at 4660.206 kb on + strand at 4660.246 kb on + strand at 4660.284 kb on + strand at 4660.284 kb on + strand at 4660.866 kb on + strand, within Shewana3_3880
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,658,452 + Shewana3_3878 0.28 -0.2 4,658,470 + Shewana3_3878 0.31 +0.3 4,658,484 - Shewana3_3878 0.34 -0.3 4,658,551 + Shewana3_3878 0.47 -0.3 4,658,871 + +0.4 4,659,339 - +0.6 4,659,392 - -0.2 4,659,454 + Shewana3_3879 0.11 -1.9 4,659,562 + Shewana3_3879 0.24 -2.6 4,659,668 + Shewana3_3879 0.36 -0.8 4,659,697 - Shewana3_3879 0.40 -0.8 4,659,748 + Shewana3_3879 0.46 -1.4 4,659,800 - Shewana3_3879 0.52 -2.2 4,659,924 - Shewana3_3879 0.66 -0.5 4,660,021 + Shewana3_3879 0.78 -2.3 4,660,029 - Shewana3_3879 0.79 -2.1 4,660,206 + -1.1 4,660,246 + -2.8 4,660,284 + +0.6 4,660,284 + -0.7 4,660,866 + Shewana3_3880 0.30 +0.1
Or see this region's nucleotide sequence