Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3850

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,622,041	+		Shewana3_3849	0.68	-0.6
4,622,041	+		Shewana3_3849	0.68	+0.5
4,622,041	+		Shewana3_3849	0.68	-0.1
4,622,041	+		Shewana3_3849	0.68	-0.9
4,622,041	+		Shewana3_3849	0.68	-0.0
4,622,041	+		Shewana3_3849	0.68	-0.1
4,622,046	+		Shewana3_3849	0.69	-0.9
4,622,049	-		Shewana3_3849	0.69	-1.2
4,622,049	-		Shewana3_3849	0.69	-1.0
4,622,049	-		Shewana3_3849	0.69	-0.1
4,622,049	-		Shewana3_3849	0.69	-2.9
4,622,054	-		Shewana3_3849	0.69	-1.4
4,622,068	+		Shewana3_3849	0.69	-0.2
4,622,068	+		Shewana3_3849	0.69	+0.3
4,622,068	+		Shewana3_3849	0.69	+0.0
4,622,068	+		Shewana3_3849	0.69	-1.0
4,622,068	+		Shewana3_3849	0.69	+0.2
4,622,068	+		Shewana3_3849	0.69	+0.3
4,622,068	+		Shewana3_3849	0.69	+0.4
4,622,068	+		Shewana3_3849	0.69	-0.5
4,622,068	+		Shewana3_3849	0.69	-0.1
4,622,068	+		Shewana3_3849	0.69	+0.1
4,622,068	+		Shewana3_3849	0.69	-0.7
4,622,068	+		Shewana3_3849	0.69	-0.1
4,622,068	+		Shewana3_3849	0.69	+1.0
4,622,068	+		Shewana3_3849	0.69	-0.1
4,622,068	+		Shewana3_3849	0.69	+0.2
4,622,068	+		Shewana3_3849	0.69	-0.2
4,622,068	+		Shewana3_3849	0.69	-0.1
4,622,068	+		Shewana3_3849	0.69	+0.3
4,622,074	+		Shewana3_3849	0.70	-0.3
4,622,074	+		Shewana3_3849	0.70	-0.3
4,622,076	-		Shewana3_3849	0.70	-1.7
4,622,076	-		Shewana3_3849	0.70	-2.5
4,622,076	-		Shewana3_3849	0.70	-1.1
4,622,076	-		Shewana3_3849	0.70	+0.1
4,622,076	-		Shewana3_3849	0.70	-0.2
4,622,076	-		Shewana3_3849	0.70	-0.9
4,622,076	-		Shewana3_3849	0.70	-2.4
4,622,076	-		Shewana3_3849	0.70	-1.8
4,622,076	-		Shewana3_3849	0.70	-3.2
4,622,076	-		Shewana3_3849	0.70	-2.4
4,622,076	-		Shewana3_3849	0.70	-0.5
4,622,076	-		Shewana3_3849	0.70	-1.2
4,622,076	-		Shewana3_3849	0.70	-3.2
4,622,078	+		Shewana3_3849	0.70	+0.2
4,622,081	-		Shewana3_3849	0.70	-1.6
4,622,087	-		Shewana3_3849	0.70	-0.5
4,622,090	+		Shewana3_3849	0.70	+0.4
4,622,124	+		Shewana3_3849	0.71	-0.3
4,622,142	+		Shewana3_3849	0.72	+0.1
4,622,150	-		Shewana3_3849	0.72	-1.3
4,622,249	+		Shewana3_3849	0.75	-0.7
4,622,261	+		Shewana3_3849	0.76	-0.5
4,622,304	+		Shewana3_3849	0.77	+0.1
4,622,310	-		Shewana3_3849	0.77	-1.5
4,622,320	-		Shewana3_3849	0.78	-0.9
4,622,320	-		Shewana3_3849	0.78	-1.7
4,622,320	-		Shewana3_3849	0.78	+0.1
4,622,351	-		Shewana3_3849	0.79	-1.5
4,622,390	+		Shewana3_3849	0.80	-2.2
4,622,398	-		Shewana3_3849	0.80	-2.9
4,622,403	-		Shewana3_3849	0.80	-1.4
4,622,406	-		Shewana3_3849	0.81	-1.7
4,622,411	-		Shewana3_3849	0.81	-0.3
4,622,427	+		Shewana3_3849	0.81	+0.2
4,622,427	+		Shewana3_3849	0.81	-0.6
4,622,435	-		Shewana3_3849	0.81	-2.1
4,622,435	-		Shewana3_3849	0.81	+0.1
4,622,440	+		Shewana3_3849	0.82	-0.4
4,622,448	-		Shewana3_3849	0.82	-0.1
4,622,462	+		Shewana3_3849	0.82	+0.3
4,622,470	-		Shewana3_3849	0.83	-1.3
4,622,489	+		Shewana3_3849	0.83	-1.4
4,622,498	-		Shewana3_3849	0.84	-0.3
4,622,506	-		Shewana3_3849	0.84	-0.6
4,622,510	+		Shewana3_3849	0.84	+0.2
4,622,519	+		Shewana3_3849	0.84	+0.2
4,622,519	+		Shewana3_3849	0.84	-1.7
4,622,520	+		Shewana3_3849	0.84	-0.1
4,622,523	-		Shewana3_3849	0.84	-1.1
4,622,523	-		Shewana3_3849	0.84	-0.7
4,622,523	-		Shewana3_3849	0.84	-1.2
4,622,524	+		Shewana3_3849	0.84	-0.3
4,622,524	+		Shewana3_3849	0.84	-0.3
4,622,527	-		Shewana3_3849	0.85	-1.3
4,622,528	-		Shewana3_3849	0.85	-2.4
4,622,532	-		Shewana3_3849	0.85	-0.6
4,622,533	-		Shewana3_3849	0.85	-1.3
4,622,577	+		Shewana3_3849	0.86	-0.5
4,622,616	+		Shewana3_3849	0.87	-0.6
4,622,624	-		Shewana3_3849	0.88	-2.5
4,622,637	+		Shewana3_3849	0.88	-0.3
4,622,637	+		Shewana3_3849	0.88	-0.5
4,622,643	+		Shewana3_3849	0.88	-0.3
4,622,643	+		Shewana3_3849	0.88	+0.4
4,622,645	+		Shewana3_3849	0.88	+0.5
4,622,650	-		Shewana3_3849	0.89	-0.3
4,622,651	-		Shewana3_3849	0.89	-0.3
4,622,658	+		Shewana3_3849	0.89	-0.8
4,622,725	-				+0.1
4,622,727	+				-1.0
4,622,738	-				+0.3
4,622,764	+				-0.0
4,622,780	+				-0.2
4,622,780	+				+0.5
4,622,780	+				-0.0
4,622,780	+				-0.1
4,622,780	+				-0.5
4,622,814	+				-0.1
4,622,814	+				-0.5
4,622,814	+				+0.5
4,622,814	+				-0.1
4,622,814	+				-0.1
4,622,814	+				+0.9
4,622,814	+				+0.7
4,622,814	+				-0.9
4,622,814	+				-0.2
4,622,814	+				+0.5
4,622,814	+				+0.3
4,622,814	+				-0.3
4,622,814	+				+0.6
4,622,814	+				+0.1
4,622,814	+				-0.1
4,622,817	-				-2.1
4,622,822	-				-2.1
4,622,822	-				-1.3
4,622,822	-				-1.7
4,622,822	-				-1.3
4,622,822	-				-2.4
4,622,822	-				-2.2
4,622,831	-				-2.9
4,622,837	+				-0.4
4,622,837	+				+0.8
4,622,837	+				+0.4
4,622,845	-				+0.7
4,622,854	+				+0.3
4,622,858	-				+0.7
4,622,858	-				-0.3
4,622,864	-				-2.3
4,622,923	-				-1.7
4,622,923	-				-3.2
4,622,982	-				-0.1
4,622,995	+				-0.1
4,622,995	+				+0.6
4,622,995	+				+1.1
4,623,001	+				+0.2
4,623,003	-				-0.8
4,623,003	-				-1.5
4,623,003	-				-2.9
4,623,022	-				-0.0
4,623,022	-				+0.3
4,623,032	+				+0.4
4,623,032	+				-3.1
4,623,040	+				-0.9
4,623,040	-				+0.7
4,623,040	-				+0.3
4,623,040	-				+0.4
4,623,040	-				+1.1
4,623,040	-				+0.7
4,623,047	+				+0.1
4,623,051	+				-0.6
4,623,059	-				+1.7
4,623,128	-		Shewana3_3850	0.17	-0.6
4,623,133	+				+0.7
4,623,134	+				+0.7
4,623,139	+		Shewana3_3850	0.19	-0.9
4,623,139	+		Shewana3_3850	0.19	-0.3
4,623,139	+		Shewana3_3850	0.19	+1.7
4,623,139	+		Shewana3_3850	0.19	-1.9
4,623,139	+		Shewana3_3850	0.19	+0.1
4,623,139	+		Shewana3_3850	0.19	-1.3
4,623,139	+		Shewana3_3850	0.19	-2.7
4,623,139	+				+0.1
4,623,139	+		Shewana3_3850	0.19	+0.7
4,623,139	+		Shewana3_3850	0.19	-1.5
4,623,140	-		Shewana3_3850	0.19	+0.4
4,623,140	-		Shewana3_3850	0.19	-1.1
4,623,140	-		Shewana3_3850	0.19	+0.7
4,623,140	-		Shewana3_3850	0.19	+0.7
4,623,141	+		Shewana3_3850	0.19	-0.7
4,623,141	+		Shewana3_3850	0.19	-0.3
4,623,142	-		Shewana3_3850	0.19	+0.1
4,623,142	-		Shewana3_3850	0.19	-0.3
4,623,147	-		Shewana3_3850	0.20	+0.1
4,623,147	-		Shewana3_3850	0.20	+0.4
4,623,147	-				+0.7
4,623,147	-		Shewana3_3850	0.20	-0.6
4,623,147	-				+1.7
4,623,149	-		Shewana3_3850	0.21	+0.7
4,623,196	-		Shewana3_3850	0.28	+0.1
4,623,247	-		Shewana3_3850	0.36	-0.3
4,623,299	-		Shewana3_3850	0.45	+0.7
4,623,334	+		Shewana3_3850	0.50	+0.1
4,623,342	-		Shewana3_3850	0.51	+0.7
4,623,342	-		Shewana3_3850	0.51	+0.7
4,623,342	-		Shewana3_3850	0.51	-1.1
4,623,342	-		Shewana3_3850	0.51	-0.3
4,623,347	-		Shewana3_3850	0.52	-1.5
4,623,351	-		Shewana3_3850	0.53	-0.9
4,623,357	-				+1.7
4,623,362	-		Shewana3_3850	0.55	+0.1
4,623,364	-		Shewana3_3850	0.55	+1.7
4,623,364	-		Shewana3_3850	0.55	+0.7
4,623,364	-		Shewana3_3850	0.55	-0.3
4,623,364	-		Shewana3_3850	0.55	-0.3
4,623,366	-				+0.7
4,623,366	-		Shewana3_3850	0.55	+0.7
4,623,436	+				+1.7
4,623,481	+				+1.7
4,623,484	+				+0.7
4,623,487	-				+1.7
4,623,487	-		Shewana3_3850	0.75	-1.6
4,623,487	-		Shewana3_3850	0.75	-0.9
4,623,492	-		Shewana3_3850	0.75	-1.1
4,623,492	-		Shewana3_3850	0.75	-1.0
4,623,492	-		Shewana3_3850	0.75	-0.9
4,623,492	-		Shewana3_3850	0.75	-0.9
4,623,492	-		Shewana3_3850	0.75	+0.1
4,623,502	-		Shewana3_3850	0.77	+0.7
4,623,532	-		Shewana3_3850	0.82	-0.6
4,623,570	-		Shewana3_3850	0.88	-0.9
4,623,570	-		Shewana3_3850	0.88	+1.7
4,623,570	-		Shewana3_3850	0.88	+0.7
4,623,570	-		Shewana3_3850	0.88	+0.3
4,623,602	-				-0.6
4,623,710	+				-2.4
4,623,712	+				-0.5
4,623,712	+				-1.7
4,623,712	-				+0.0
4,623,720	-				-0.4
4,623,720	-				-0.7
4,623,720	-				-0.6
4,623,720	-				+0.5
4,623,720	-				-0.2
4,623,720	-				-0.4
4,623,723	+				+1.7
4,623,723	+				-0.5
4,623,724	+				+1.7
4,623,725	+				-1.3
4,623,733	-				-0.1
4,623,773	+				-0.3
4,623,817	+				-0.9
4,623,840	+				+1.7
4,623,850	-				-0.5
4,623,897	-				-1.1
4,623,938	-				+0.0
4,623,939	-				-0.3
4,623,959	+				+1.7
4,623,964	+				-2.5
4,623,970	-				+0.2
4,623,970	-				-1.2
4,623,970	-				-0.7
4,623,970	-				+0.5
4,623,977	+				-1.3
4,623,977	+				-0.9
4,623,977	-				-0.7
4,623,977	-				-0.7
4,623,977	-				-0.5
4,623,991	-				-1.0
4,624,033	+				-1.5
4,624,041	-				+0.4
4,624,043	+				-2.0
4,624,082	+				-2.3
4,624,082	+				-1.0
4,624,082	+				-0.4
4,624,082	+				+0.0
4,624,082	+				-2.5
4,624,082	+				-0.4
4,624,089	+				-3.5
4,624,089	+				-4.1
4,624,090	-				-0.2
4,624,090	-				-0.2
4,624,090	-				-0.5
4,624,090	-				+0.2
4,624,096	-				-0.6
4,624,096	-				+0.2
4,624,100	+				-2.0
4,624,108	-				-0.1
4,624,139	+				-0.4
4,624,139	+				-1.4
4,624,139	+				-1.7
4,624,139	+				-1.7
4,624,139	+				-0.9
4,624,139	+				-0.6
4,624,146	+				-1.3
4,624,147	-				-0.8
4,624,147	-				-0.5
4,624,147	-				+0.7
4,624,147	-				-1.6
4,624,147	-				+0.4
4,624,147	-				-1.2
4,624,147	-				-1.5
4,624,148	+				-1.8
4,624,154	-				-1.2
4,624,156	-				-0.9
4,624,162	+				-0.6
4,624,162	+				-2.2
4,624,162	+				-0.1
4,624,162	+				-0.5
4,624,167	+				-1.1
4,624,170	-				-1.5
4,624,184	-				-2.7
4,624,201	+				-1.9
4,624,202	+				-2.8
4,624,207	+				-1.2
4,624,207	+				-0.7
4,624,209	-				-1.4
4,624,215	-				-2.1
4,624,215	-				-0.3
4,624,219	-				-1.2
4,624,222	+				-0.3
4,624,222	+				-2.4
4,624,222	+				+2.0
4,624,222	+				-0.7
4,624,230	-				-0.2
4,624,230	-				-1.4
4,624,232	+				-0.1
4,624,232	+				-0.6
4,624,232	+				-1.1
4,624,232	+				-0.7
4,624,232	+				-1.6
4,624,234	+				-2.1
4,624,234	+				-1.5
4,624,240	-				-0.6
4,624,240	-				-2.0
4,624,240	-				-1.7
4,624,240	-				-1.7
4,624,240	-				-0.6
4,624,240	-				-0.5
4,624,240	-				-0.6
4,624,241	+				-0.5
4,624,241	+				-1.3
4,624,242	-				-0.2
4,624,242	-				-0.7
4,624,254	-				-0.1
4,624,254	-				-1.4
4,624,273	-				+0.5
4,624,302	+				-3.3
4,624,367	+				-1.6
4,624,405	+				+0.1
4,624,411	+				-0.8
4,624,413	+				-0.2
4,624,413	+				-0.4
4,624,413	+				-0.3
4,624,419	-				-1.6
4,624,421	-				+0.1
4,624,421	-				-1.1
4,624,421	-				-1.5
4,624,467	-				+1.7
4,624,499	+				-0.8
4,624,507	-				-1.4
4,624,507	-				-1.6
4,624,550	-				-0.8