Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3819 and Shewana3_3820 are separated by 216 nucleotides Shewana3_3820 and Shewana3_3821 are separated by 100 nucleotides
Shewana3_3819: Shewana3_3819 - hypothetical protein (RefSeq), at 4,585,765 to 4,586,880
_3819
Shewana3_3820: Shewana3_3820 - Mg chelatase, subunit ChlI (RefSeq), at 4,587,097 to 4,588,623
_3820
Shewana3_3821: Shewana3_3821 - putative acyltransferase (RefSeq), at 4,588,724 to 4,589,617
_3821
Position (kb)
4587
4588
4589 Strain fitness (log2 ratio)
-2
-1
0
1 at 4586.223 kb on - strand, within Shewana3_3819 at 4586.522 kb on - strand, within Shewana3_3819 at 4586.610 kb on - strand, within Shewana3_3819 at 4586.669 kb on + strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.749 kb on + strand, within Shewana3_3819 at 4586.817 kb on - strand at 4586.982 kb on - strand at 4587.100 kb on + strand at 4587.238 kb on + strand at 4587.246 kb on - strand at 4587.348 kb on - strand, within Shewana3_3820 at 4587.422 kb on + strand, within Shewana3_3820 at 4587.563 kb on - strand, within Shewana3_3820 at 4587.694 kb on - strand, within Shewana3_3820 at 4587.827 kb on - strand, within Shewana3_3820 at 4587.980 kb on + strand, within Shewana3_3820 at 4588.036 kb on - strand, within Shewana3_3820 at 4588.215 kb on + strand, within Shewana3_3820 at 4588.302 kb on - strand, within Shewana3_3820 at 4588.382 kb on - strand, within Shewana3_3820 at 4588.450 kb on - strand, within Shewana3_3820 at 4588.575 kb on - strand at 4588.575 kb on - strand at 4588.686 kb on + strand at 4588.828 kb on + strand, within Shewana3_3821 at 4588.889 kb on + strand, within Shewana3_3821 at 4588.930 kb on - strand, within Shewana3_3821 at 4589.005 kb on + strand, within Shewana3_3821 at 4589.120 kb on + strand, within Shewana3_3821 at 4589.120 kb on + strand, within Shewana3_3821 at 4589.261 kb on - strand, within Shewana3_3821 at 4589.466 kb on - strand, within Shewana3_3821 at 4589.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,586,223 - Shewana3_3819 0.41 +0.1 4,586,522 - Shewana3_3819 0.68 -0.2 4,586,610 - Shewana3_3819 0.76 +0.8 4,586,669 + Shewana3_3819 0.81 -0.5 4,586,742 - Shewana3_3819 0.88 +0.6 4,586,742 - Shewana3_3819 0.88 -0.1 4,586,742 - Shewana3_3819 0.88 +0.2 4,586,742 - Shewana3_3819 0.88 +0.2 4,586,749 + Shewana3_3819 0.88 -0.2 4,586,817 - -0.6 4,586,982 - +0.5 4,587,100 + -0.9 4,587,238 + -0.1 4,587,246 - +0.0 4,587,348 - Shewana3_3820 0.16 +0.3 4,587,422 + Shewana3_3820 0.21 -0.5 4,587,563 - Shewana3_3820 0.31 +0.6 4,587,694 - Shewana3_3820 0.39 +0.3 4,587,827 - Shewana3_3820 0.48 +0.6 4,587,980 + Shewana3_3820 0.58 +0.3 4,588,036 - Shewana3_3820 0.61 +0.5 4,588,215 + Shewana3_3820 0.73 -0.0 4,588,302 - Shewana3_3820 0.79 +0.7 4,588,382 - Shewana3_3820 0.84 -0.4 4,588,450 - Shewana3_3820 0.89 +0.3 4,588,575 - +0.4 4,588,575 - +0.2 4,588,686 + -0.6 4,588,828 + Shewana3_3821 0.12 -0.1 4,588,889 + Shewana3_3821 0.18 -0.8 4,588,930 - Shewana3_3821 0.23 -0.6 4,589,005 + Shewana3_3821 0.31 -1.3 4,589,120 + Shewana3_3821 0.44 +0.1 4,589,120 + Shewana3_3821 0.44 -0.1 4,589,261 - Shewana3_3821 0.60 -1.9 4,589,466 - Shewana3_3821 0.83 -0.6 4,589,590 - -1.3
Or see this region's nucleotide sequence