Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3805 and Shewana3_3806 are separated by 20 nucleotides Shewana3_3806 and Shewana3_3807 are separated by 54 nucleotides
Shewana3_3805: Shewana3_3805 - hypothetical protein (RefSeq), at 4,570,262 to 4,571,080
_3805
Shewana3_3806: Shewana3_3806 - major facilitator transporter (RefSeq), at 4,571,101 to 4,572,588
_3806
Shewana3_3807: Shewana3_3807 - aminoglycoside phosphotransferase (RefSeq), at 4,572,643 to 4,573,707
_3807
Position (kb)
4571
4572
4573 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4570.179 kb on + strand at 4570.305 kb on + strand at 4570.325 kb on + strand at 4570.340 kb on - strand at 4570.518 kb on + strand, within Shewana3_3805 at 4570.781 kb on - strand, within Shewana3_3805 at 4570.854 kb on + strand, within Shewana3_3805 at 4570.939 kb on - strand, within Shewana3_3805 at 4571.140 kb on + strand at 4571.140 kb on + strand at 4571.308 kb on + strand, within Shewana3_3806 at 4571.397 kb on - strand, within Shewana3_3806 at 4571.484 kb on + strand, within Shewana3_3806 at 4571.492 kb on - strand, within Shewana3_3806 at 4571.492 kb on - strand, within Shewana3_3806 at 4571.492 kb on - strand, within Shewana3_3806 at 4571.725 kb on + strand, within Shewana3_3806 at 4571.764 kb on + strand, within Shewana3_3806 at 4571.885 kb on - strand, within Shewana3_3806 at 4572.448 kb on - strand at 4572.620 kb on - strand at 4572.649 kb on - strand at 4572.689 kb on - strand at 4572.701 kb on - strand at 4572.917 kb on - strand, within Shewana3_3807 at 4573.135 kb on + strand, within Shewana3_3807 at 4573.190 kb on + strand, within Shewana3_3807 at 4573.190 kb on + strand, within Shewana3_3807 at 4573.190 kb on + strand, within Shewana3_3807 at 4573.198 kb on + strand, within Shewana3_3807 at 4573.198 kb on - strand, within Shewana3_3807 at 4573.323 kb on - strand, within Shewana3_3807 at 4573.356 kb on + strand, within Shewana3_3807 at 4573.443 kb on - strand, within Shewana3_3807 at 4573.575 kb on + strand, within Shewana3_3807 at 4573.578 kb on - strand, within Shewana3_3807
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,570,179 + -1.7 4,570,305 + -0.7 4,570,325 + +0.0 4,570,340 - -0.1 4,570,518 + Shewana3_3805 0.31 -0.3 4,570,781 - Shewana3_3805 0.63 -1.0 4,570,854 + Shewana3_3805 0.72 -1.3 4,570,939 - Shewana3_3805 0.83 -1.2 4,571,140 + -2.0 4,571,140 + +0.1 4,571,308 + Shewana3_3806 0.14 -3.4 4,571,397 - Shewana3_3806 0.20 -0.5 4,571,484 + Shewana3_3806 0.26 -1.1 4,571,492 - Shewana3_3806 0.26 -0.2 4,571,492 - Shewana3_3806 0.26 -3.1 4,571,492 - Shewana3_3806 0.26 +0.5 4,571,725 + Shewana3_3806 0.42 -0.1 4,571,764 + Shewana3_3806 0.45 -2.0 4,571,885 - Shewana3_3806 0.53 -0.6 4,572,448 - -0.6 4,572,620 - +0.6 4,572,649 - +0.4 4,572,689 - +0.4 4,572,701 - +0.2 4,572,917 - Shewana3_3807 0.26 +0.7 4,573,135 + Shewana3_3807 0.46 -0.6 4,573,190 + Shewana3_3807 0.51 -0.6 4,573,190 + Shewana3_3807 0.51 -1.6 4,573,190 + Shewana3_3807 0.51 -0.9 4,573,198 + Shewana3_3807 0.52 -0.9 4,573,198 - Shewana3_3807 0.52 +0.4 4,573,323 - Shewana3_3807 0.64 +0.3 4,573,356 + Shewana3_3807 0.67 -0.2 4,573,443 - Shewana3_3807 0.75 +0.7 4,573,575 + Shewana3_3807 0.88 -1.3 4,573,578 - Shewana3_3807 0.88 +0.5
Or see this region's nucleotide sequence