Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3796 and Shewana3_3797 are separated by 235 nucleotides Shewana3_3797 and Shewana3_3798 are separated by 176 nucleotides Shewana3_3798 and Shewana3_3799 are separated by 22 nucleotides
Shewana3_3796: Shewana3_3796 - hypothetical protein (RefSeq), at 4,561,828 to 4,562,625
_3796
Shewana3_3797: Shewana3_3797 - nucleotidase (RefSeq), at 4,562,861 to 4,563,577
_3797
Shewana3_3798: Shewana3_3798 - hypothetical protein (RefSeq), at 4,563,754 to 4,564,215
_3798
Shewana3_3799: Shewana3_3799 - hypothetical protein (RefSeq), at 4,564,238 to 4,564,729
_3799
Position (kb)
4562
4563
4564 Strain fitness (log2 ratio)
-2
-1
0
1 at 4562.044 kb on - strand, within Shewana3_3796 at 4562.182 kb on - strand, within Shewana3_3796 at 4562.275 kb on - strand, within Shewana3_3796 at 4562.324 kb on + strand, within Shewana3_3796 at 4562.422 kb on + strand, within Shewana3_3796 at 4562.430 kb on - strand, within Shewana3_3796 at 4562.499 kb on + strand, within Shewana3_3796 at 4562.504 kb on + strand, within Shewana3_3796 at 4562.568 kb on + strand at 4562.576 kb on - strand at 4562.633 kb on + strand at 4562.635 kb on + strand at 4562.643 kb on - strand at 4562.647 kb on + strand at 4562.880 kb on + strand at 4563.068 kb on + strand, within Shewana3_3797 at 4563.171 kb on + strand, within Shewana3_3797 at 4563.251 kb on + strand, within Shewana3_3797 at 4563.582 kb on - strand at 4563.582 kb on - strand at 4563.904 kb on - strand, within Shewana3_3798 at 4563.937 kb on - strand, within Shewana3_3798 at 4564.039 kb on - strand, within Shewana3_3798 at 4564.041 kb on + strand, within Shewana3_3798 at 4564.157 kb on - strand, within Shewana3_3798 at 4564.189 kb on - strand at 4564.393 kb on - strand, within Shewana3_3799 at 4564.411 kb on - strand, within Shewana3_3799
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,562,044 - Shewana3_3796 0.27 -1.1 4,562,182 - Shewana3_3796 0.44 -1.1 4,562,275 - Shewana3_3796 0.56 -1.4 4,562,324 + Shewana3_3796 0.62 -0.1 4,562,422 + Shewana3_3796 0.74 +0.1 4,562,430 - Shewana3_3796 0.75 -2.4 4,562,499 + Shewana3_3796 0.84 -0.0 4,562,504 + Shewana3_3796 0.85 +0.4 4,562,568 + +0.6 4,562,576 - +0.9 4,562,633 + +0.8 4,562,635 + +0.8 4,562,643 - -1.9 4,562,647 + +0.7 4,562,880 + +1.4 4,563,068 + Shewana3_3797 0.29 +0.7 4,563,171 + Shewana3_3797 0.43 +0.2 4,563,251 + Shewana3_3797 0.54 +0.2 4,563,582 - +0.3 4,563,582 - +0.4 4,563,904 - Shewana3_3798 0.32 +0.2 4,563,937 - Shewana3_3798 0.40 +0.6 4,564,039 - Shewana3_3798 0.62 +0.6 4,564,041 + Shewana3_3798 0.62 -1.2 4,564,157 - Shewana3_3798 0.87 +0.0 4,564,189 - +0.8 4,564,393 - Shewana3_3799 0.32 +0.6 4,564,411 - Shewana3_3799 0.35 +0.4
Or see this region's nucleotide sequence