Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3719

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3717 and Shewana3_3718 are separated by 168 nucleotidesShewana3_3718 and Shewana3_3719 are separated by 15 nucleotidesShewana3_3719 and Shewana3_3720 are separated by 139 nucleotides Shewana3_3717: Shewana3_3717 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 4,460,267 to 4,461,187 _3717 Shewana3_3718: Shewana3_3718 - DedA family protein (RefSeq), at 4,461,356 to 4,461,967 _3718 Shewana3_3719: Shewana3_3719 - hypothetical protein (RefSeq), at 4,461,983 to 4,463,518 _3719 Shewana3_3720: Shewana3_3720 - hypothetical protein (RefSeq), at 4,463,658 to 4,464,698 _3720 Position (kb) 4461 4462 4463 4464Strain fitness (log2 ratio) -3 -2 -1 0 1at 4461.293 kb on - strandat 4461.552 kb on + strand, within Shewana3_3718at 4461.673 kb on + strand, within Shewana3_3718at 4461.714 kb on + strand, within Shewana3_3718at 4461.714 kb on + strand, within Shewana3_3718at 4461.722 kb on - strand, within Shewana3_3718at 4461.976 kb on - strandat 4461.980 kb on + strandat 4461.990 kb on + strandat 4462.245 kb on + strand, within Shewana3_3719at 4462.318 kb on + strand, within Shewana3_3719at 4462.361 kb on + strand, within Shewana3_3719at 4462.706 kb on - strand, within Shewana3_3719at 4462.772 kb on + strand, within Shewana3_3719at 4462.853 kb on + strand, within Shewana3_3719at 4462.853 kb on + strand, within Shewana3_3719at 4462.941 kb on - strand, within Shewana3_3719at 4462.965 kb on + strand, within Shewana3_3719at 4463.063 kb on - strand, within Shewana3_3719at 4463.063 kb on - strand, within Shewana3_3719at 4463.542 kb on + strandat 4463.550 kb on - strandat 4463.550 kb on - strandat 4463.592 kb on + strandat 4463.676 kb on - strandat 4463.697 kb on - strandat 4463.765 kb on + strand, within Shewana3_3720at 4463.809 kb on + strand, within Shewana3_3720at 4463.942 kb on - strand, within Shewana3_3720at 4463.978 kb on + strand, within Shewana3_3720at 4464.010 kb on - strand, within Shewana3_3720at 4464.010 kb on - strand, within Shewana3_3720at 4464.010 kb on - strand, within Shewana3_3720at 4464.017 kb on + strand, within Shewana3_3720at 4464.063 kb on - strand, within Shewana3_3720at 4464.240 kb on + strand, within Shewana3_3720at 4464.407 kb on + strand, within Shewana3_3720at 4464.420 kb on - strand, within Shewana3_3720at 4464.490 kb on + strand, within Shewana3_3720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,461,293 - +0.3
4,461,552 + Shewana3_3718 0.32 -0.1
4,461,673 + Shewana3_3718 0.52 -0.3
4,461,714 + Shewana3_3718 0.58 -0.1
4,461,714 + Shewana3_3718 0.58 -0.2
4,461,722 - Shewana3_3718 0.60 +0.2
4,461,976 - -2.5
4,461,980 + +0.5
4,461,990 + +0.2
4,462,245 + Shewana3_3719 0.17 -2.4
4,462,318 + Shewana3_3719 0.22 -1.5
4,462,361 + Shewana3_3719 0.25 -1.7
4,462,706 - Shewana3_3719 0.47 -0.5
4,462,772 + Shewana3_3719 0.51 -3.7
4,462,853 + Shewana3_3719 0.57 -1.4
4,462,853 + Shewana3_3719 0.57 +0.3
4,462,941 - Shewana3_3719 0.62 -2.2
4,462,965 + Shewana3_3719 0.64 -0.6
4,463,063 - Shewana3_3719 0.70 -0.8
4,463,063 - Shewana3_3719 0.70 -0.9
4,463,542 + -0.1
4,463,550 - -1.0
4,463,550 - +0.8
4,463,592 + -1.0
4,463,676 - -0.8
4,463,697 - -0.9
4,463,765 + Shewana3_3720 0.10 -0.2
4,463,809 + Shewana3_3720 0.15 -0.5
4,463,942 - Shewana3_3720 0.27 -0.5
4,463,978 + Shewana3_3720 0.31 -1.2
4,464,010 - Shewana3_3720 0.34 +0.6
4,464,010 - Shewana3_3720 0.34 -0.0
4,464,010 - Shewana3_3720 0.34 +0.6
4,464,017 + Shewana3_3720 0.34 +0.2
4,464,063 - Shewana3_3720 0.39 +0.6
4,464,240 + Shewana3_3720 0.56 -1.8
4,464,407 + Shewana3_3720 0.72 -0.8
4,464,420 - Shewana3_3720 0.73 -0.5
4,464,490 + Shewana3_3720 0.80 -0.1

Or see this region's nucleotide sequence