Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3712 and Shewana3_3713 are separated by 52 nucleotides Shewana3_3713 and Shewana3_3714 are separated by 143 nucleotides
Shewana3_3712: Shewana3_3712 - pseudouridine synthase (RefSeq), at 4,454,090 to 4,455,007
_3712
Shewana3_3713: Shewana3_3713 - ATP-dependent protease La (RefSeq), at 4,455,060 to 4,455,635
_3713
Shewana3_3714: Shewana3_3714 - hypothetical protein (RefSeq), at 4,455,779 to 4,456,834
_3714
Position (kb)
4455
4456 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4454.127 kb on + strand at 4454.199 kb on + strand, within Shewana3_3712 at 4454.213 kb on - strand, within Shewana3_3712 at 4454.534 kb on - strand, within Shewana3_3712 at 4454.624 kb on + strand, within Shewana3_3712 at 4454.632 kb on - strand, within Shewana3_3712 at 4454.636 kb on + strand, within Shewana3_3712 at 4454.649 kb on - strand, within Shewana3_3712 at 4454.656 kb on - strand, within Shewana3_3712 at 4454.679 kb on + strand, within Shewana3_3712 at 4454.692 kb on - strand, within Shewana3_3712 at 4454.860 kb on - strand, within Shewana3_3712 at 4455.038 kb on + strand at 4455.046 kb on - strand at 4455.075 kb on - strand at 4455.147 kb on + strand, within Shewana3_3713 at 4455.325 kb on + strand, within Shewana3_3713 at 4455.354 kb on - strand, within Shewana3_3713 at 4455.398 kb on - strand, within Shewana3_3713 at 4455.398 kb on - strand, within Shewana3_3713 at 4455.439 kb on + strand, within Shewana3_3713 at 4455.457 kb on - strand, within Shewana3_3713 at 4455.460 kb on + strand, within Shewana3_3713 at 4455.529 kb on + strand, within Shewana3_3713 at 4455.574 kb on + strand, within Shewana3_3713 at 4455.920 kb on + strand, within Shewana3_3714 at 4456.088 kb on + strand, within Shewana3_3714 at 4456.096 kb on - strand, within Shewana3_3714 at 4456.146 kb on - strand, within Shewana3_3714 at 4456.177 kb on + strand, within Shewana3_3714 at 4456.498 kb on - strand, within Shewana3_3714 at 4456.499 kb on - strand, within Shewana3_3714 at 4456.503 kb on + strand, within Shewana3_3714 at 4456.503 kb on + strand, within Shewana3_3714 at 4456.542 kb on + strand, within Shewana3_3714
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,454,127 + -1.7 4,454,199 + Shewana3_3712 0.12 -3.0 4,454,213 - Shewana3_3712 0.13 +0.7 4,454,534 - Shewana3_3712 0.48 +0.8 4,454,624 + Shewana3_3712 0.58 -0.2 4,454,632 - Shewana3_3712 0.59 +0.6 4,454,636 + Shewana3_3712 0.59 -0.2 4,454,649 - Shewana3_3712 0.61 -0.3 4,454,656 - Shewana3_3712 0.62 -0.3 4,454,679 + Shewana3_3712 0.64 +0.2 4,454,692 - Shewana3_3712 0.66 +0.1 4,454,860 - Shewana3_3712 0.84 +0.0 4,455,038 + -1.4 4,455,046 - +0.2 4,455,075 - +0.2 4,455,147 + Shewana3_3713 0.15 +0.7 4,455,325 + Shewana3_3713 0.46 +0.0 4,455,354 - Shewana3_3713 0.51 -0.5 4,455,398 - Shewana3_3713 0.59 +0.3 4,455,398 - Shewana3_3713 0.59 +0.5 4,455,439 + Shewana3_3713 0.66 +0.2 4,455,457 - Shewana3_3713 0.69 +0.4 4,455,460 + Shewana3_3713 0.69 -0.0 4,455,529 + Shewana3_3713 0.81 +1.2 4,455,574 + Shewana3_3713 0.89 -0.5 4,455,920 + Shewana3_3714 0.13 +0.4 4,456,088 + Shewana3_3714 0.29 +1.6 4,456,096 - Shewana3_3714 0.30 +0.3 4,456,146 - Shewana3_3714 0.35 -0.2 4,456,177 + Shewana3_3714 0.38 -1.0 4,456,498 - Shewana3_3714 0.68 -0.2 4,456,499 - Shewana3_3714 0.68 +0.5 4,456,503 + Shewana3_3714 0.69 -1.3 4,456,503 + Shewana3_3714 0.69 -0.2 4,456,542 + Shewana3_3714 0.72 -0.9
Or see this region's nucleotide sequence