Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3660 and Shewana3_3661 overlap by 4 nucleotides Shewana3_3661 and Shewana3_3662 overlap by 4 nucleotides Shewana3_3662 and Shewana3_3663 are separated by 6 nucleotides
Shewana3_3660: Shewana3_3660 - type II secretion system protein E (RefSeq), at 4,396,084 to 4,397,844
_3660
Shewana3_3661: Shewana3_3661 - TPR repeat-containing protein (RefSeq), at 4,397,841 to 4,399,184
_3661
Shewana3_3662: Shewana3_3662 - MSHA biogenesis protein MshM (RefSeq), at 4,399,181 to 4,400,110
_3662
Shewana3_3663: Shewana3_3663 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 4,400,117 to 4,401,802
_3663
Position (kb)
4397
4398
4399
4400 Strain fitness (log2 ratio)
-2
-1
0
1 at 4396.885 kb on + strand, within Shewana3_3660 at 4396.961 kb on - strand, within Shewana3_3660 at 4397.124 kb on + strand, within Shewana3_3660 at 4397.327 kb on - strand, within Shewana3_3660 at 4397.697 kb on + strand at 4397.712 kb on + strand at 4397.752 kb on - strand at 4397.889 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.921 kb on - strand at 4397.921 kb on - strand at 4397.976 kb on + strand, within Shewana3_3661 at 4397.984 kb on - strand, within Shewana3_3661 at 4398.245 kb on - strand, within Shewana3_3661 at 4398.316 kb on - strand, within Shewana3_3661 at 4398.357 kb on - strand, within Shewana3_3661 at 4398.457 kb on + strand, within Shewana3_3661 at 4398.526 kb on + strand, within Shewana3_3661 at 4398.589 kb on - strand, within Shewana3_3661 at 4398.631 kb on - strand, within Shewana3_3661 at 4398.685 kb on + strand, within Shewana3_3661 at 4398.804 kb on - strand, within Shewana3_3661 at 4398.836 kb on + strand, within Shewana3_3661 at 4399.098 kb on - strand at 4399.127 kb on + strand at 4399.224 kb on - strand at 4399.226 kb on - strand at 4399.236 kb on - strand at 4399.453 kb on + strand, within Shewana3_3662 at 4399.653 kb on - strand, within Shewana3_3662 at 4399.709 kb on + strand, within Shewana3_3662 at 4399.717 kb on - strand, within Shewana3_3662 at 4399.721 kb on + strand, within Shewana3_3662 at 4399.845 kb on + strand, within Shewana3_3662 at 4399.853 kb on - strand, within Shewana3_3662 at 4399.865 kb on + strand, within Shewana3_3662 at 4399.875 kb on + strand, within Shewana3_3662 at 4399.948 kb on - strand, within Shewana3_3662
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,396,885 + Shewana3_3660 0.45 -1.9 4,396,961 - Shewana3_3660 0.50 -1.5 4,397,124 + Shewana3_3660 0.59 -0.9 4,397,327 - Shewana3_3660 0.71 +1.2 4,397,697 + -1.3 4,397,712 + +0.4 4,397,752 - -0.2 4,397,889 + -1.0 4,397,913 + -0.8 4,397,913 + -1.1 4,397,913 + -1.0 4,397,913 + -0.1 4,397,913 + -0.8 4,397,921 - +0.3 4,397,921 - +0.4 4,397,976 + Shewana3_3661 0.10 -2.3 4,397,984 - Shewana3_3661 0.11 +0.4 4,398,245 - Shewana3_3661 0.30 +0.4 4,398,316 - Shewana3_3661 0.35 -2.0 4,398,357 - Shewana3_3661 0.38 -0.2 4,398,457 + Shewana3_3661 0.46 -0.0 4,398,526 + Shewana3_3661 0.51 -0.9 4,398,589 - Shewana3_3661 0.56 -0.7 4,398,631 - Shewana3_3661 0.59 -1.3 4,398,685 + Shewana3_3661 0.63 -0.4 4,398,804 - Shewana3_3661 0.72 -0.2 4,398,836 + Shewana3_3661 0.74 -0.2 4,399,098 - -0.4 4,399,127 + -0.9 4,399,224 - -0.2 4,399,226 - -0.5 4,399,236 - -0.1 4,399,453 + Shewana3_3662 0.29 -0.4 4,399,653 - Shewana3_3662 0.51 -0.3 4,399,709 + Shewana3_3662 0.57 -1.1 4,399,717 - Shewana3_3662 0.58 +0.2 4,399,721 + Shewana3_3662 0.58 -0.3 4,399,845 + Shewana3_3662 0.71 -0.9 4,399,853 - Shewana3_3662 0.72 -0.3 4,399,865 + Shewana3_3662 0.74 -0.9 4,399,875 + Shewana3_3662 0.75 -0.5 4,399,948 - Shewana3_3662 0.82 +0.7
Or see this region's nucleotide sequence