Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3608 and Shewana3_3609 are separated by 16 nucleotides Shewana3_3609 and Shewana3_3610 are separated by 8 nucleotides Shewana3_3610 and Shewana3_3611 are separated by 216 nucleotides
Shewana3_3608: Shewana3_3608 - response regulator receiver protein (RefSeq), at 4,332,416 to 4,333,444
_3608
Shewana3_3609: Shewana3_3609 - secretion protein HlyD family protein (RefSeq), at 4,333,461 to 4,334,519
_3609
Shewana3_3610: Shewana3_3610 - MarR family transcriptional regulator (RefSeq), at 4,334,528 to 4,335,004
_3610
Shewana3_3611: Shewana3_3611 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,335,221 to 4,337,125
_3611
Position (kb)
4333
4334
4335 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4332.599 kb on + strand, within Shewana3_3608 at 4332.604 kb on + strand, within Shewana3_3608 at 4332.632 kb on + strand, within Shewana3_3608 at 4332.651 kb on + strand, within Shewana3_3608 at 4332.691 kb on - strand, within Shewana3_3608 at 4332.696 kb on - strand, within Shewana3_3608 at 4332.798 kb on + strand, within Shewana3_3608 at 4332.801 kb on - strand, within Shewana3_3608 at 4333.360 kb on + strand at 4333.360 kb on + strand at 4333.360 kb on + strand at 4333.497 kb on - strand at 4333.513 kb on - strand at 4333.607 kb on + strand, within Shewana3_3609 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.647 kb on + strand, within Shewana3_3609 at 4333.927 kb on + strand, within Shewana3_3609 at 4334.011 kb on - strand, within Shewana3_3609 at 4334.052 kb on - strand, within Shewana3_3609 at 4334.246 kb on - strand, within Shewana3_3609 at 4334.260 kb on + strand, within Shewana3_3609 at 4334.547 kb on + strand at 4334.741 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.781 kb on - strand, within Shewana3_3610 at 4334.847 kb on - strand, within Shewana3_3610 at 4334.895 kb on - strand, within Shewana3_3610 at 4335.031 kb on + strand at 4335.251 kb on + strand at 4335.251 kb on + strand at 4335.251 kb on + strand at 4335.251 kb on + strand at 4335.422 kb on + strand, within Shewana3_3611 at 4335.432 kb on + strand, within Shewana3_3611
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,332,599 + Shewana3_3608 0.18 -1.0 4,332,604 + Shewana3_3608 0.18 -1.9 4,332,632 + Shewana3_3608 0.21 +1.8 4,332,651 + Shewana3_3608 0.23 -2.2 4,332,691 - Shewana3_3608 0.27 +0.4 4,332,696 - Shewana3_3608 0.27 +0.5 4,332,798 + Shewana3_3608 0.37 -0.5 4,332,801 - Shewana3_3608 0.37 +0.2 4,333,360 + +0.3 4,333,360 + +0.3 4,333,360 + -0.0 4,333,497 - +0.6 4,333,513 - +0.5 4,333,607 + Shewana3_3609 0.14 -0.5 4,333,607 + Shewana3_3609 0.14 -1.6 4,333,607 + Shewana3_3609 0.14 -0.6 4,333,647 + Shewana3_3609 0.18 -0.8 4,333,927 + Shewana3_3609 0.44 -0.4 4,334,011 - Shewana3_3609 0.52 +0.3 4,334,052 - Shewana3_3609 0.56 -0.0 4,334,246 - Shewana3_3609 0.74 -0.4 4,334,260 + Shewana3_3609 0.75 -0.3 4,334,547 + +0.8 4,334,741 - Shewana3_3610 0.45 +1.2 4,334,781 - Shewana3_3610 0.53 +1.3 4,334,781 - Shewana3_3610 0.53 +1.3 4,334,781 - Shewana3_3610 0.53 +1.1 4,334,781 - Shewana3_3610 0.53 +1.2 4,334,847 - Shewana3_3610 0.67 +1.3 4,334,895 - Shewana3_3610 0.77 +1.1 4,335,031 + -1.4 4,335,251 + -0.6 4,335,251 + -0.6 4,335,251 + -0.7 4,335,251 + -1.8 4,335,422 + Shewana3_3611 0.11 +0.8 4,335,432 + Shewana3_3611 0.11 -1.5
Or see this region's nucleotide sequence