Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3609

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3608 and Shewana3_3609 are separated by 16 nucleotidesShewana3_3609 and Shewana3_3610 are separated by 8 nucleotidesShewana3_3610 and Shewana3_3611 are separated by 216 nucleotides Shewana3_3608: Shewana3_3608 - response regulator receiver protein (RefSeq), at 4,332,416 to 4,333,444 _3608 Shewana3_3609: Shewana3_3609 - secretion protein HlyD family protein (RefSeq), at 4,333,461 to 4,334,519 _3609 Shewana3_3610: Shewana3_3610 - MarR family transcriptional regulator (RefSeq), at 4,334,528 to 4,335,004 _3610 Shewana3_3611: Shewana3_3611 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,335,221 to 4,337,125 _3611 Position (kb) 4333 4334 4335Strain fitness (log2 ratio) -2 -1 0 1 2at 4332.599 kb on + strand, within Shewana3_3608at 4332.604 kb on + strand, within Shewana3_3608at 4332.632 kb on + strand, within Shewana3_3608at 4332.651 kb on + strand, within Shewana3_3608at 4332.691 kb on - strand, within Shewana3_3608at 4332.696 kb on - strand, within Shewana3_3608at 4332.798 kb on + strand, within Shewana3_3608at 4332.801 kb on - strand, within Shewana3_3608at 4333.360 kb on + strandat 4333.360 kb on + strandat 4333.360 kb on + strandat 4333.497 kb on - strandat 4333.513 kb on - strandat 4333.607 kb on + strand, within Shewana3_3609at 4333.607 kb on + strand, within Shewana3_3609at 4333.607 kb on + strand, within Shewana3_3609at 4333.647 kb on + strand, within Shewana3_3609at 4333.927 kb on + strand, within Shewana3_3609at 4334.011 kb on - strand, within Shewana3_3609at 4334.052 kb on - strand, within Shewana3_3609at 4334.246 kb on - strand, within Shewana3_3609at 4334.260 kb on + strand, within Shewana3_3609at 4334.547 kb on + strandat 4334.741 kb on - strand, within Shewana3_3610at 4334.781 kb on - strand, within Shewana3_3610at 4334.781 kb on - strand, within Shewana3_3610at 4334.781 kb on - strand, within Shewana3_3610at 4334.781 kb on - strand, within Shewana3_3610at 4334.847 kb on - strand, within Shewana3_3610at 4334.895 kb on - strand, within Shewana3_3610at 4335.031 kb on + strandat 4335.251 kb on + strandat 4335.251 kb on + strandat 4335.251 kb on + strandat 4335.251 kb on + strandat 4335.422 kb on + strand, within Shewana3_3611at 4335.432 kb on + strand, within Shewana3_3611

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,332,599 + Shewana3_3608 0.18 -1.0
4,332,604 + Shewana3_3608 0.18 -1.9
4,332,632 + Shewana3_3608 0.21 +1.8
4,332,651 + Shewana3_3608 0.23 -2.2
4,332,691 - Shewana3_3608 0.27 +0.4
4,332,696 - Shewana3_3608 0.27 +0.5
4,332,798 + Shewana3_3608 0.37 -0.5
4,332,801 - Shewana3_3608 0.37 +0.2
4,333,360 + +0.3
4,333,360 + +0.3
4,333,360 + -0.0
4,333,497 - +0.6
4,333,513 - +0.5
4,333,607 + Shewana3_3609 0.14 -0.5
4,333,607 + Shewana3_3609 0.14 -1.6
4,333,607 + Shewana3_3609 0.14 -0.6
4,333,647 + Shewana3_3609 0.18 -0.8
4,333,927 + Shewana3_3609 0.44 -0.4
4,334,011 - Shewana3_3609 0.52 +0.3
4,334,052 - Shewana3_3609 0.56 -0.0
4,334,246 - Shewana3_3609 0.74 -0.4
4,334,260 + Shewana3_3609 0.75 -0.3
4,334,547 + +0.8
4,334,741 - Shewana3_3610 0.45 +1.2
4,334,781 - Shewana3_3610 0.53 +1.3
4,334,781 - Shewana3_3610 0.53 +1.3
4,334,781 - Shewana3_3610 0.53 +1.1
4,334,781 - Shewana3_3610 0.53 +1.2
4,334,847 - Shewana3_3610 0.67 +1.3
4,334,895 - Shewana3_3610 0.77 +1.1
4,335,031 + -1.4
4,335,251 + -0.6
4,335,251 + -0.6
4,335,251 + -0.7
4,335,251 + -1.8
4,335,422 + Shewana3_3611 0.11 +0.8
4,335,432 + Shewana3_3611 0.11 -1.5

Or see this region's nucleotide sequence