Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3556

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3555 and Shewana3_3556 overlap by 8 nucleotidesShewana3_3556 and Shewana3_3557 overlap by 14 nucleotidesShewana3_3557 and Shewana3_3558 overlap by 4 nucleotides Shewana3_3555: Shewana3_3555 - von Willebrand factor, type A (RefSeq), at 4,262,666 to 4,264,387 _3555 Shewana3_3556: Shewana3_3556 - von Willebrand factor, type A (RefSeq), at 4,264,380 to 4,265,387 _3556 Shewana3_3557: Shewana3_3557 - hypothetical protein (RefSeq), at 4,265,374 to 4,265,892 _3557 Shewana3_3558: Shewana3_3558 - hypothetical protein (RefSeq), at 4,265,889 to 4,266,881 _3558 Position (kb) 4264 4265 4266Strain fitness (log2 ratio) -1 0 1at 4263.396 kb on - strand, within Shewana3_3555at 4263.410 kb on + strand, within Shewana3_3555at 4263.494 kb on + strand, within Shewana3_3555at 4263.835 kb on - strand, within Shewana3_3555at 4263.868 kb on + strand, within Shewana3_3555at 4263.868 kb on + strand, within Shewana3_3555at 4263.876 kb on - strand, within Shewana3_3555at 4263.876 kb on - strand, within Shewana3_3555at 4263.888 kb on + strand, within Shewana3_3555at 4263.888 kb on + strand, within Shewana3_3555at 4264.084 kb on - strand, within Shewana3_3555at 4264.132 kb on + strand, within Shewana3_3555at 4264.594 kb on - strand, within Shewana3_3556at 4264.614 kb on + strand, within Shewana3_3556at 4264.781 kb on + strand, within Shewana3_3556at 4265.111 kb on + strand, within Shewana3_3556at 4265.123 kb on + strand, within Shewana3_3556at 4265.181 kb on + strand, within Shewana3_3556at 4265.259 kb on - strand, within Shewana3_3556at 4265.424 kb on + strandat 4265.432 kb on - strand, within Shewana3_3557at 4265.537 kb on - strand, within Shewana3_3557at 4265.594 kb on + strand, within Shewana3_3557at 4265.602 kb on - strand, within Shewana3_3557at 4266.109 kb on - strand, within Shewana3_3558at 4266.255 kb on - strand, within Shewana3_3558at 4266.376 kb on + strand, within Shewana3_3558

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,263,396 - Shewana3_3555 0.42 +0.5
4,263,410 + Shewana3_3555 0.43 -0.2
4,263,494 + Shewana3_3555 0.48 -1.2
4,263,835 - Shewana3_3555 0.68 +0.1
4,263,868 + Shewana3_3555 0.70 -0.3
4,263,868 + Shewana3_3555 0.70 +0.3
4,263,876 - Shewana3_3555 0.70 -0.3
4,263,876 - Shewana3_3555 0.70 +0.2
4,263,888 + Shewana3_3555 0.71 -0.2
4,263,888 + Shewana3_3555 0.71 -1.0
4,264,084 - Shewana3_3555 0.82 +0.3
4,264,132 + Shewana3_3555 0.85 -0.3
4,264,594 - Shewana3_3556 0.21 -0.7
4,264,614 + Shewana3_3556 0.23 -0.1
4,264,781 + Shewana3_3556 0.40 -1.0
4,265,111 + Shewana3_3556 0.73 +0.4
4,265,123 + Shewana3_3556 0.74 -0.6
4,265,181 + Shewana3_3556 0.79 -0.3
4,265,259 - Shewana3_3556 0.87 +0.0
4,265,424 + -0.0
4,265,432 - Shewana3_3557 0.11 +0.2
4,265,537 - Shewana3_3557 0.31 -1.1
4,265,594 + Shewana3_3557 0.42 +0.7
4,265,602 - Shewana3_3557 0.44 +0.1
4,266,109 - Shewana3_3558 0.22 -0.2
4,266,255 - Shewana3_3558 0.37 +0.5
4,266,376 + Shewana3_3558 0.49 +0.2

Or see this region's nucleotide sequence