Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3512 and Shewana3_3513 are separated by 64 nucleotides Shewana3_3513 and Shewana3_3514 are separated by 206 nucleotides
Shewana3_3512: Shewana3_3512 - transcriptional regulator (RefSeq), at 4,212,053 to 4,212,955
_3512
Shewana3_3513: Shewana3_3513 - Dyp-type peroxidase family protein (RefSeq), at 4,213,020 to 4,213,961
_3513
Shewana3_3514: Shewana3_3514 - gamma-glutamyltransferase 2 (RefSeq), at 4,214,168 to 4,215,880
_3514
Position (kb) 4213
4214 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4212.168 kb on + strand, within Shewana3_3512 at 4212.224 kb on - strand, within Shewana3_3512 at 4212.235 kb on + strand, within Shewana3_3512 at 4212.245 kb on + strand, within Shewana3_3512 at 4212.313 kb on + strand, within Shewana3_3512 at 4212.362 kb on - strand, within Shewana3_3512 at 4212.379 kb on - strand, within Shewana3_3512 at 4212.420 kb on - strand, within Shewana3_3512 at 4212.441 kb on + strand, within Shewana3_3512 at 4212.471 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.481 kb on + strand, within Shewana3_3512 at 4212.484 kb on - strand, within Shewana3_3512 at 4212.486 kb on + strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.489 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.494 kb on - strand, within Shewana3_3512 at 4212.526 kb on + strand, within Shewana3_3512 at 4212.552 kb on - strand, within Shewana3_3512 at 4212.667 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.676 kb on + strand, within Shewana3_3512 at 4212.684 kb on - strand, within Shewana3_3512 at 4212.747 kb on + strand, within Shewana3_3512 at 4212.841 kb on + strand, within Shewana3_3512 at 4212.849 kb on - strand, within Shewana3_3512 at 4213.008 kb on - strand at 4213.024 kb on + strand at 4213.074 kb on + strand at 4213.084 kb on + strand at 4213.158 kb on + strand, within Shewana3_3513 at 4213.219 kb on + strand, within Shewana3_3513 at 4213.221 kb on - strand, within Shewana3_3513 at 4213.262 kb on - strand, within Shewana3_3513 at 4213.275 kb on - strand, within Shewana3_3513 at 4213.900 kb on - strand at 4213.942 kb on - strand at 4214.151 kb on - strand at 4214.151 kb on - strand at 4214.295 kb on + strand at 4214.586 kb on - strand, within Shewana3_3514 at 4214.658 kb on + strand, within Shewana3_3514 at 4214.700 kb on - strand, within Shewana3_3514 at 4214.742 kb on - strand, within Shewana3_3514 at 4214.957 kb on + strand, within Shewana3_3514
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,212,168 + Shewana3_3512 0.13 -0.9 4,212,224 - Shewana3_3512 0.19 -0.4 4,212,235 + Shewana3_3512 0.20 -1.4 4,212,245 + Shewana3_3512 0.21 -0.3 4,212,313 + Shewana3_3512 0.29 -0.9 4,212,362 - Shewana3_3512 0.34 -1.0 4,212,379 - Shewana3_3512 0.36 -0.4 4,212,420 - Shewana3_3512 0.41 -0.3 4,212,441 + Shewana3_3512 0.43 -0.3 4,212,471 + Shewana3_3512 0.46 -0.2 4,212,481 + Shewana3_3512 0.47 +0.0 4,212,481 + Shewana3_3512 0.47 +0.2 4,212,481 + Shewana3_3512 0.47 -0.1 4,212,484 - Shewana3_3512 0.48 -0.1 4,212,486 + Shewana3_3512 0.48 +0.7 4,212,489 - Shewana3_3512 0.48 -1.4 4,212,489 - Shewana3_3512 0.48 -0.5 4,212,489 - Shewana3_3512 0.48 -2.1 4,212,494 - Shewana3_3512 0.49 -0.6 4,212,494 - Shewana3_3512 0.49 -1.8 4,212,526 + Shewana3_3512 0.52 +0.1 4,212,552 - Shewana3_3512 0.55 -1.0 4,212,667 + Shewana3_3512 0.68 +0.9 4,212,676 + Shewana3_3512 0.69 +0.4 4,212,676 + Shewana3_3512 0.69 +0.2 4,212,676 + Shewana3_3512 0.69 +0.1 4,212,684 - Shewana3_3512 0.70 -0.9 4,212,747 + Shewana3_3512 0.77 +1.1 4,212,841 + Shewana3_3512 0.87 +0.9 4,212,849 - Shewana3_3512 0.88 -0.0 4,213,008 - -2.4 4,213,024 + -3.7 4,213,074 + -1.4 4,213,084 + -2.5 4,213,158 + Shewana3_3513 0.15 -3.9 4,213,219 + Shewana3_3513 0.21 -4.9 4,213,221 - Shewana3_3513 0.21 -3.9 4,213,262 - Shewana3_3513 0.26 -4.7 4,213,275 - Shewana3_3513 0.27 -2.4 4,213,900 - -5.4 4,213,942 - -3.3 4,214,151 - +0.5 4,214,151 - +1.0 4,214,295 + -1.6 4,214,586 - Shewana3_3514 0.24 +1.0 4,214,658 + Shewana3_3514 0.29 -1.2 4,214,700 - Shewana3_3514 0.31 +1.1 4,214,742 - Shewana3_3514 0.34 +0.9 4,214,957 + Shewana3_3514 0.46 -3.3
Or see this region's nucleotide sequence