Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3503 and Shewana3_3504 are separated by 122 nucleotides Shewana3_3504 and Shewana3_3505 are separated by 225 nucleotides Shewana3_3505 and Shewana3_3506 are separated by 303 nucleotides
Shewana3_3503: Shewana3_3503 - 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq), at 4,204,423 to 4,205,628
_3503
Shewana3_3504: Shewana3_3504 - yecA family protein (RefSeq), at 4,205,751 to 4,206,326
_3504
Shewana3_3505: Shewana3_3505 - cell division protein ZapA (RefSeq), at 4,206,552 to 4,206,854
_3505
Shewana3_3506: Shewana3_3506 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 4,207,158 to 4,207,835
_3506
Position (kb)
4205
4206
4207 Strain fitness (log2 ratio)
-1
0
1 at 4205.728 kb on - strand at 4206.206 kb on - strand, within Shewana3_3504 at 4206.227 kb on - strand, within Shewana3_3504 at 4206.464 kb on + strand at 4206.492 kb on + strand at 4206.504 kb on + strand at 4206.504 kb on + strand at 4206.504 kb on + strand at 4206.540 kb on + strand at 4206.649 kb on + strand, within Shewana3_3505 at 4206.649 kb on + strand, within Shewana3_3505 at 4206.662 kb on + strand, within Shewana3_3505 at 4206.670 kb on - strand, within Shewana3_3505 at 4206.854 kb on + strand at 4206.854 kb on + strand at 4206.854 kb on + strand at 4206.884 kb on + strand at 4207.112 kb on + strand at 4207.254 kb on + strand, within Shewana3_3506
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,205,728 - +1.1 4,206,206 - Shewana3_3504 0.79 +0.8 4,206,227 - Shewana3_3504 0.83 +0.9 4,206,464 + -1.3 4,206,492 + -0.7 4,206,504 + -0.7 4,206,504 + -1.5 4,206,504 + -1.4 4,206,540 + +1.0 4,206,649 + Shewana3_3505 0.32 +1.1 4,206,649 + Shewana3_3505 0.32 +0.8 4,206,662 + Shewana3_3505 0.36 +1.0 4,206,670 - Shewana3_3505 0.39 +0.2 4,206,854 + -0.3 4,206,854 + -0.0 4,206,854 + +0.3 4,206,884 + +0.1 4,207,112 + +0.5 4,207,254 + Shewana3_3506 0.14 -0.1
Or see this region's nucleotide sequence