Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3491 and Shewana3_3492 are separated by 177 nucleotides Shewana3_3492 and Shewana3_3493 are separated by 276 nucleotides
Shewana3_3491: Shewana3_3491 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 4,186,284 to 4,187,948
_3491
Shewana3_3492: Shewana3_3492 - hypothetical protein (RefSeq), at 4,188,126 to 4,188,515
_3492
Shewana3_3493: Shewana3_3493 - hypothetical protein (RefSeq), at 4,188,792 to 4,189,037
_3493
Position (kb)
4188
4189
4190 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4187.823 kb on + strand at 4187.908 kb on + strand at 4187.916 kb on - strand at 4187.956 kb on + strand at 4188.035 kb on + strand at 4188.044 kb on - strand at 4188.171 kb on + strand, within Shewana3_3492 at 4188.208 kb on - strand, within Shewana3_3492 at 4188.221 kb on - strand, within Shewana3_3492 at 4188.329 kb on + strand, within Shewana3_3492 at 4188.433 kb on + strand, within Shewana3_3492 at 4188.433 kb on + strand, within Shewana3_3492 at 4188.456 kb on - strand, within Shewana3_3492 at 4188.603 kb on - strand at 4188.614 kb on + strand at 4188.623 kb on - strand at 4188.727 kb on - strand at 4188.751 kb on + strand at 4188.990 kb on + strand, within Shewana3_3493 at 4189.263 kb on - strand at 4189.265 kb on + strand at 4189.301 kb on + strand at 4189.314 kb on - strand at 4189.390 kb on + strand at 4189.390 kb on + strand at 4189.570 kb on - strand at 4189.570 kb on - strand at 4189.828 kb on + strand at 4189.913 kb on - strand at 4189.950 kb on + strand at 4189.958 kb on + strand at 4189.958 kb on - strand at 4189.966 kb on - strand at 4189.966 kb on - strand at 4189.966 kb on - strand at 4189.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,187,823 + +1.2 4,187,908 + +0.5 4,187,916 - -0.0 4,187,956 + +0.3 4,188,035 + +1.0 4,188,044 - +1.1 4,188,171 + Shewana3_3492 0.12 -0.1 4,188,208 - Shewana3_3492 0.21 +0.5 4,188,221 - Shewana3_3492 0.24 +0.4 4,188,329 + Shewana3_3492 0.52 -2.2 4,188,433 + Shewana3_3492 0.79 +0.1 4,188,433 + Shewana3_3492 0.79 -2.3 4,188,456 - Shewana3_3492 0.85 -0.3 4,188,603 - -0.8 4,188,614 + -1.4 4,188,623 - +0.2 4,188,727 - +0.2 4,188,751 + -0.5 4,188,990 + Shewana3_3493 0.80 +1.2 4,189,263 - +0.4 4,189,265 + -2.7 4,189,301 + -0.2 4,189,314 - +0.7 4,189,390 + -0.8 4,189,390 + -0.8 4,189,570 - +0.8 4,189,570 - -0.7 4,189,828 + +1.8 4,189,913 - -0.5 4,189,950 + +0.2 4,189,958 + +0.8 4,189,958 - +0.2 4,189,966 - -0.6 4,189,966 - +0.2 4,189,966 - -1.5 4,189,966 - -3.1
Or see this region's nucleotide sequence