Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3490
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,184,900 | + | Shewana3_3489 | 0.69 | +0.2 | |
4,184,912 | + | Shewana3_3489 | 0.70 | -2.7 | |
4,184,912 | + | Shewana3_3489 | 0.70 | -0.3 | |
4,184,912 | + | Shewana3_3489 | 0.70 | +0.0 | |
4,184,918 | + | Shewana3_3489 | 0.70 | -0.6 | |
4,184,977 | + | Shewana3_3489 | 0.72 | -0.6 | |
4,184,987 | + | Shewana3_3489 | 0.73 | -2.6 | |
4,185,062 | + | Shewana3_3489 | 0.76 | -1.5 | |
4,185,210 | + | Shewana3_3489 | 0.83 | -0.3 | |
4,185,470 | - | +0.2 | |||
4,185,518 | - | +0.8 | |||
4,185,763 | + | -0.5 | |||
4,185,763 | + | -3.3 | |||
4,185,771 | + | -2.1 | |||
4,185,781 | + | -0.7 | |||
4,185,789 | - | -0.8 | |||
4,185,849 | - | Shewana3_3490 | 0.34 | -1.4 | |
4,185,930 | + | Shewana3_3490 | 0.67 | -2.4 | |
4,185,957 | + | Shewana3_3490 | 0.79 | -3.6 | |
4,185,957 | + | Shewana3_3490 | 0.79 | -2.9 | |
4,185,965 | - | Shewana3_3490 | 0.82 | -0.5 | |
4,186,010 | + | -1.9 | |||
4,186,049 | + | -0.5 | |||
4,186,238 | + | -1.2 | |||
4,186,246 | - | -0.8 | |||
4,186,348 | + | -0.5 | |||
4,186,363 | - | -1.1 | |||
4,186,490 | - | Shewana3_3491 | 0.12 | -1.2 | |
4,186,490 | - | Shewana3_3491 | 0.12 | +0.2 | |
4,186,519 | - | Shewana3_3491 | 0.14 | -0.1 | |
4,186,960 | - | Shewana3_3491 | 0.41 | -0.3 |
Or see this region's nucleotide sequence