Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3482 and Shewana3_3483 are separated by 261 nucleotides Shewana3_3483 and Shewana3_3484 are separated by 83 nucleotides Shewana3_3484 and Shewana3_3485 are separated by 50 nucleotides
Shewana3_3482: Shewana3_3482 - alkaline phosphatase (RefSeq), at 4,175,750 to 4,177,516
_3482
Shewana3_3483: Shewana3_3483 - CBS domain-containing protein (RefSeq), at 4,177,778 to 4,178,203
_3483
Shewana3_3484: Shewana3_3484 - hypothetical protein (RefSeq), at 4,178,287 to 4,178,892
_3484
Shewana3_3485: Shewana3_3485 - MATE efflux family protein (RefSeq), at 4,178,943 to 4,180,304
_3485
Position (kb)
4177
4178
4179 Strain fitness (log2 ratio)
-2
-1
0
1 at 4176.866 kb on - strand, within Shewana3_3482 at 4177.081 kb on - strand, within Shewana3_3482 at 4177.183 kb on - strand, within Shewana3_3482 at 4177.254 kb on - strand, within Shewana3_3482 at 4177.317 kb on - strand, within Shewana3_3482 at 4177.370 kb on - strand at 4177.440 kb on - strand at 4177.461 kb on - strand at 4177.565 kb on - strand at 4177.565 kb on - strand at 4177.565 kb on - strand at 4177.685 kb on - strand at 4177.692 kb on + strand at 4177.692 kb on + strand at 4177.707 kb on - strand at 4177.738 kb on - strand at 4177.800 kb on + strand at 4178.035 kb on - strand, within Shewana3_3483 at 4178.067 kb on - strand, within Shewana3_3483 at 4178.175 kb on + strand at 4178.213 kb on + strand at 4178.247 kb on - strand at 4178.254 kb on - strand at 4178.407 kb on + strand, within Shewana3_3484 at 4178.415 kb on - strand, within Shewana3_3484 at 4178.556 kb on + strand, within Shewana3_3484 at 4178.741 kb on + strand, within Shewana3_3484 at 4178.802 kb on - strand, within Shewana3_3484 at 4178.804 kb on - strand, within Shewana3_3484 at 4178.893 kb on + strand at 4178.893 kb on + strand at 4178.901 kb on - strand at 4178.901 kb on - strand at 4178.901 kb on - strand at 4178.901 kb on - strand at 4178.918 kb on + strand at 4178.926 kb on - strand at 4179.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,176,866 - Shewana3_3482 0.63 -0.7 4,177,081 - Shewana3_3482 0.75 +0.7 4,177,183 - Shewana3_3482 0.81 -0.6 4,177,254 - Shewana3_3482 0.85 -0.5 4,177,317 - Shewana3_3482 0.89 +0.0 4,177,370 - +0.4 4,177,440 - +1.0 4,177,461 - -0.3 4,177,565 - +1.5 4,177,565 - -0.0 4,177,565 - +1.3 4,177,685 - +0.2 4,177,692 + +0.4 4,177,692 + +0.0 4,177,707 - +0.0 4,177,738 - +0.3 4,177,800 + +0.3 4,178,035 - Shewana3_3483 0.60 -0.4 4,178,067 - Shewana3_3483 0.68 +0.7 4,178,175 + +0.6 4,178,213 + +0.7 4,178,247 - -1.7 4,178,254 - -2.7 4,178,407 + Shewana3_3484 0.20 -0.4 4,178,415 - Shewana3_3484 0.21 -0.3 4,178,556 + Shewana3_3484 0.44 -0.4 4,178,741 + Shewana3_3484 0.75 +0.1 4,178,802 - Shewana3_3484 0.85 -0.5 4,178,804 - Shewana3_3484 0.85 -0.2 4,178,893 + +0.4 4,178,893 + +0.3 4,178,901 - -1.0 4,178,901 - -0.9 4,178,901 - -2.4 4,178,901 - -0.3 4,178,918 + +0.4 4,178,926 - -1.2 4,179,043 + -1.0
Or see this region's nucleotide sequence