Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3474 and Shewana3_3475 are separated by 3 nucleotides Shewana3_3475 and rihA are separated by 294 nucleotides
Shewana3_3474: Shewana3_3474 - hypothetical protein (RefSeq), at 4,167,151 to 4,168,587
_3474
Shewana3_3475: Shewana3_3475 - hypothetical protein (RefSeq), at 4,168,591 to 4,169,865
_3475
Shewana3_3476: rihA - ribonucleoside hydrolase 1 (RefSeq), at 4,170,160 to 4,171,116
rihA
Position (kb) 4168
4169
4170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4167.780 kb on - strand, within Shewana3_3474 at 4168.080 kb on + strand, within Shewana3_3474 at 4168.271 kb on - strand, within Shewana3_3474 at 4168.326 kb on - strand, within Shewana3_3474 at 4168.438 kb on - strand, within Shewana3_3474 at 4168.453 kb on - strand at 4168.536 kb on + strand at 4168.574 kb on + strand at 4168.738 kb on + strand, within Shewana3_3475 at 4168.812 kb on + strand, within Shewana3_3475 at 4168.834 kb on + strand, within Shewana3_3475 at 4168.993 kb on - strand, within Shewana3_3475 at 4169.049 kb on + strand, within Shewana3_3475 at 4169.057 kb on - strand, within Shewana3_3475 at 4169.159 kb on + strand, within Shewana3_3475 at 4169.270 kb on - strand, within Shewana3_3475 at 4169.270 kb on - strand, within Shewana3_3475 at 4169.430 kb on + strand, within Shewana3_3475 at 4169.675 kb on + strand, within Shewana3_3475 at 4169.844 kb on + strand at 4169.884 kb on + strand at 4169.950 kb on + strand at 4169.958 kb on + strand at 4170.021 kb on - strand at 4170.092 kb on - strand at 4170.150 kb on - strand at 4170.158 kb on - strand at 4170.314 kb on + strand, within rihA at 4170.314 kb on + strand, within rihA at 4170.320 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.322 kb on - strand, within rihA at 4170.361 kb on + strand, within rihA at 4170.367 kb on + strand, within rihA at 4170.375 kb on - strand, within rihA at 4170.405 kb on + strand, within rihA at 4170.405 kb on + strand, within rihA at 4170.526 kb on - strand, within rihA at 4170.532 kb on + strand, within rihA at 4170.668 kb on + strand, within rihA at 4170.676 kb on - strand, within rihA at 4170.722 kb on + strand, within rihA
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,167,780 - Shewana3_3474 0.44 +0.4 4,168,080 + Shewana3_3474 0.65 -1.9 4,168,271 - Shewana3_3474 0.78 +0.2 4,168,326 - Shewana3_3474 0.82 +1.0 4,168,438 - Shewana3_3474 0.90 -0.2 4,168,453 - -0.0 4,168,536 + +0.4 4,168,574 + -1.3 4,168,738 + Shewana3_3475 0.12 +0.1 4,168,812 + Shewana3_3475 0.17 -2.3 4,168,834 + Shewana3_3475 0.19 -1.0 4,168,993 - Shewana3_3475 0.32 -0.9 4,169,049 + Shewana3_3475 0.36 -0.2 4,169,057 - Shewana3_3475 0.37 -1.7 4,169,159 + Shewana3_3475 0.45 +0.2 4,169,270 - Shewana3_3475 0.53 -0.9 4,169,270 - Shewana3_3475 0.53 -2.1 4,169,430 + Shewana3_3475 0.66 -3.5 4,169,675 + Shewana3_3475 0.85 +0.7 4,169,844 + +0.1 4,169,884 + +1.8 4,169,950 + -1.7 4,169,958 + -0.5 4,170,021 - -0.7 4,170,092 - -1.3 4,170,150 - -0.9 4,170,158 - +0.0 4,170,314 + rihA Shewana3_3476 0.16 +0.3 4,170,314 + rihA Shewana3_3476 0.16 +0.1 4,170,320 - rihA Shewana3_3476 0.17 +0.3 4,170,322 - rihA Shewana3_3476 0.17 -0.2 4,170,322 - rihA Shewana3_3476 0.17 +0.1 4,170,322 - rihA Shewana3_3476 0.17 -0.1 4,170,322 - rihA Shewana3_3476 0.17 +0.6 4,170,361 + rihA Shewana3_3476 0.21 -0.0 4,170,367 + rihA Shewana3_3476 0.22 +0.7 4,170,375 - rihA Shewana3_3476 0.22 -1.4 4,170,405 + rihA Shewana3_3476 0.26 +0.2 4,170,405 + rihA Shewana3_3476 0.26 -0.6 4,170,526 - rihA Shewana3_3476 0.38 -0.1 4,170,532 + rihA Shewana3_3476 0.39 +0.4 4,170,668 + rihA Shewana3_3476 0.53 -0.6 4,170,676 - rihA Shewana3_3476 0.54 -0.1 4,170,722 + rihA Shewana3_3476 0.59 +0.6
Or see this region's nucleotide sequence