Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3465 and Shewana3_3466 are separated by 395 nucleotides Shewana3_3466 and Shewana3_3467 are separated by 139 nucleotides Shewana3_3467 and Shewana3_3468 are separated by 9 nucleotides
Shewana3_3465: Shewana3_3465 - agmatine deiminase (RefSeq), at 4,155,321 to 4,156,433
_3465
Shewana3_3466: Shewana3_3466 - short-chain dehydrogenase/reductase SDR (RefSeq), at 4,156,829 to 4,157,707
_3466
Shewana3_3467: Shewana3_3467 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 4,157,847 to 4,158,554
_3467
Shewana3_3468: Shewana3_3468 - butyryl-CoA:acetate CoA transferase (RefSeq), at 4,158,564 to 4,159,226
_3468
Position (kb)
4156
4157
4158 Strain fitness (log2 ratio)
-1
0
1
2 at 4155.848 kb on - strand, within Shewana3_3465 at 4155.877 kb on - strand, within Shewana3_3465 at 4156.092 kb on + strand, within Shewana3_3465 at 4156.192 kb on - strand, within Shewana3_3465 at 4156.233 kb on + strand, within Shewana3_3465 at 4156.300 kb on - strand, within Shewana3_3465 at 4156.396 kb on + strand at 4156.652 kb on + strand at 4156.652 kb on + strand at 4156.657 kb on + strand at 4156.733 kb on - strand at 4156.749 kb on + strand at 4156.847 kb on - strand at 4156.847 kb on - strand at 4156.893 kb on - strand at 4156.930 kb on + strand, within Shewana3_3466 at 4157.089 kb on - strand, within Shewana3_3466 at 4157.089 kb on - strand, within Shewana3_3466 at 4157.269 kb on + strand, within Shewana3_3466 at 4157.277 kb on - strand, within Shewana3_3466 at 4157.277 kb on - strand, within Shewana3_3466 at 4157.327 kb on + strand, within Shewana3_3466 at 4157.329 kb on + strand, within Shewana3_3466 at 4157.440 kb on - strand, within Shewana3_3466 at 4157.508 kb on - strand, within Shewana3_3466 at 4157.598 kb on - strand, within Shewana3_3466 at 4157.603 kb on - strand, within Shewana3_3466 at 4157.674 kb on - strand at 4157.680 kb on + strand at 4157.680 kb on + strand at 4157.698 kb on - strand at 4157.698 kb on - strand at 4157.770 kb on + strand at 4157.770 kb on + strand at 4157.778 kb on - strand at 4157.812 kb on + strand at 4157.830 kb on + strand at 4157.867 kb on + strand at 4157.937 kb on - strand, within Shewana3_3467 at 4157.937 kb on - strand, within Shewana3_3467 at 4158.087 kb on - strand, within Shewana3_3467 at 4158.260 kb on + strand, within Shewana3_3467 at 4158.503 kb on - strand at 4158.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,155,848 - Shewana3_3465 0.47 +0.1 4,155,877 - Shewana3_3465 0.50 -0.1 4,156,092 + Shewana3_3465 0.69 -0.6 4,156,192 - Shewana3_3465 0.78 -0.0 4,156,233 + Shewana3_3465 0.82 -1.7 4,156,300 - Shewana3_3465 0.88 +0.2 4,156,396 + -1.2 4,156,652 + +0.4 4,156,652 + +0.4 4,156,657 + +0.7 4,156,733 - +2.0 4,156,749 + +0.5 4,156,847 - +0.9 4,156,847 - +0.7 4,156,893 - +0.6 4,156,930 + Shewana3_3466 0.11 +0.1 4,157,089 - Shewana3_3466 0.30 +0.7 4,157,089 - Shewana3_3466 0.30 +0.6 4,157,269 + Shewana3_3466 0.50 -0.6 4,157,277 - Shewana3_3466 0.51 +0.5 4,157,277 - Shewana3_3466 0.51 +1.7 4,157,327 + Shewana3_3466 0.57 -1.1 4,157,329 + Shewana3_3466 0.57 -0.6 4,157,440 - Shewana3_3466 0.70 +0.2 4,157,508 - Shewana3_3466 0.77 -0.1 4,157,598 - Shewana3_3466 0.87 +0.4 4,157,603 - Shewana3_3466 0.88 +0.5 4,157,674 - -0.3 4,157,680 + -0.0 4,157,680 + +0.3 4,157,698 - +0.4 4,157,698 - +0.1 4,157,770 + +0.5 4,157,770 + -0.4 4,157,778 - +0.7 4,157,812 + +0.4 4,157,830 + -0.7 4,157,867 + -0.3 4,157,937 - Shewana3_3467 0.13 -0.6 4,157,937 - Shewana3_3467 0.13 +0.1 4,158,087 - Shewana3_3467 0.34 +0.8 4,158,260 + Shewana3_3467 0.58 +0.4 4,158,503 - -0.8 4,158,505 + -0.4
Or see this region's nucleotide sequence