Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3428 and Shewana3_3429 are separated by 241 nucleotides Shewana3_3429 and Shewana3_3430 overlap by 4 nucleotides
Shewana3_3428: Shewana3_3428 - hypothetical protein (RefSeq), at 4,103,707 to 4,105,332
_3428
Shewana3_3429: Shewana3_3429 - NapD family protein (RefSeq), at 4,105,574 to 4,105,843
_3429
Shewana3_3430: Shewana3_3430 - nitrate reductase catalytic subunit (RefSeq), at 4,105,840 to 4,108,320
_3430
Position (kb)
4105
4106 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4104.621 kb on + strand, within Shewana3_3428 at 4104.987 kb on + strand, within Shewana3_3428 at 4105.046 kb on - strand, within Shewana3_3428 at 4105.153 kb on + strand, within Shewana3_3428 at 4105.153 kb on + strand, within Shewana3_3428 at 4105.345 kb on + strand at 4105.345 kb on + strand at 4105.490 kb on + strand at 4105.490 kb on + strand at 4105.498 kb on - strand at 4105.636 kb on + strand, within Shewana3_3429 at 4105.746 kb on + strand, within Shewana3_3429 at 4105.805 kb on + strand, within Shewana3_3429 at 4105.957 kb on - strand at 4106.078 kb on + strand at 4106.086 kb on - strand at 4106.243 kb on + strand, within Shewana3_3430 at 4106.250 kb on + strand, within Shewana3_3430 at 4106.422 kb on + strand, within Shewana3_3430 at 4106.634 kb on - strand, within Shewana3_3430 at 4106.760 kb on - strand, within Shewana3_3430 at 4106.796 kb on + strand, within Shewana3_3430
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,104,621 + Shewana3_3428 0.56 -3.9 4,104,987 + Shewana3_3428 0.79 -0.9 4,105,046 - Shewana3_3428 0.82 -0.6 4,105,153 + Shewana3_3428 0.89 +0.1 4,105,153 + Shewana3_3428 0.89 -0.8 4,105,345 + -1.1 4,105,345 + +0.1 4,105,490 + +0.6 4,105,490 + +0.9 4,105,498 - -1.8 4,105,636 + Shewana3_3429 0.23 +0.3 4,105,746 + Shewana3_3429 0.64 +0.2 4,105,805 + Shewana3_3429 0.86 +0.8 4,105,957 - -0.5 4,106,078 + -0.4 4,106,086 - -0.3 4,106,243 + Shewana3_3430 0.16 -0.4 4,106,250 + Shewana3_3430 0.17 -2.1 4,106,422 + Shewana3_3430 0.23 -1.6 4,106,634 - Shewana3_3430 0.32 -0.6 4,106,760 - Shewana3_3430 0.37 -0.5 4,106,796 + Shewana3_3430 0.39 +0.4
Or see this region's nucleotide sequence