Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3397

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3396 and Shewana3_3397 are separated by 46 nucleotidesShewana3_3397 and Shewana3_3398 are separated by 111 nucleotides Shewana3_3396: Shewana3_3396 - glucose-methanol-choline oxidoreductase (RefSeq), at 4,065,211 to 4,066,812 _3396 Shewana3_3397: Shewana3_3397 - hypothetical protein (RefSeq), at 4,066,859 to 4,067,365 _3397 Shewana3_3398: Shewana3_3398 - alpha/beta hydrolase fold (RefSeq), at 4,067,477 to 4,068,460 _3398 Position (kb) 4066 4067 4068Strain fitness (log2 ratio) -2 -1 0 1at 4065.946 kb on - strand, within Shewana3_3396at 4066.167 kb on + strand, within Shewana3_3396at 4066.190 kb on - strand, within Shewana3_3396at 4066.256 kb on + strand, within Shewana3_3396at 4066.432 kb on - strand, within Shewana3_3396at 4066.444 kb on + strand, within Shewana3_3396at 4066.444 kb on + strand, within Shewana3_3396at 4066.452 kb on - strand, within Shewana3_3396at 4066.953 kb on - strand, within Shewana3_3397at 4067.027 kb on + strand, within Shewana3_3397at 4067.027 kb on - strand, within Shewana3_3397at 4067.152 kb on + strand, within Shewana3_3397at 4067.173 kb on - strand, within Shewana3_3397at 4067.187 kb on - strand, within Shewana3_3397at 4067.231 kb on - strand, within Shewana3_3397at 4067.344 kb on + strandat 4067.358 kb on - strandat 4067.530 kb on - strandat 4067.562 kb on - strandat 4067.623 kb on + strand, within Shewana3_3398at 4067.666 kb on + strand, within Shewana3_3398at 4067.676 kb on + strand, within Shewana3_3398at 4067.689 kb on - strand, within Shewana3_3398at 4067.731 kb on - strand, within Shewana3_3398at 4067.771 kb on - strand, within Shewana3_3398at 4067.825 kb on - strand, within Shewana3_3398at 4067.872 kb on - strand, within Shewana3_3398at 4067.900 kb on + strand, within Shewana3_3398at 4067.900 kb on + strand, within Shewana3_3398at 4067.939 kb on - strand, within Shewana3_3398at 4067.959 kb on + strand, within Shewana3_3398at 4068.223 kb on - strand, within Shewana3_3398at 4068.223 kb on - strand, within Shewana3_3398at 4068.237 kb on + strand, within Shewana3_3398at 4068.363 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,065,946 - Shewana3_3396 0.46 -0.5
4,066,167 + Shewana3_3396 0.60 -0.5
4,066,190 - Shewana3_3396 0.61 -2.2
4,066,256 + Shewana3_3396 0.65 -0.7
4,066,432 - Shewana3_3396 0.76 -0.3
4,066,444 + Shewana3_3396 0.77 -2.1
4,066,444 + Shewana3_3396 0.77 -1.1
4,066,452 - Shewana3_3396 0.77 -1.1
4,066,953 - Shewana3_3397 0.19 -1.8
4,067,027 + Shewana3_3397 0.33 -1.7
4,067,027 - Shewana3_3397 0.33 -0.4
4,067,152 + Shewana3_3397 0.58 -1.5
4,067,173 - Shewana3_3397 0.62 +0.5
4,067,187 - Shewana3_3397 0.65 -0.2
4,067,231 - Shewana3_3397 0.73 -0.4
4,067,344 + +1.5
4,067,358 - -0.8
4,067,530 - -0.5
4,067,562 - +0.4
4,067,623 + Shewana3_3398 0.15 +0.1
4,067,666 + Shewana3_3398 0.19 +0.3
4,067,676 + Shewana3_3398 0.20 +0.8
4,067,689 - Shewana3_3398 0.22 -1.6
4,067,731 - Shewana3_3398 0.26 -0.2
4,067,771 - Shewana3_3398 0.30 +0.2
4,067,825 - Shewana3_3398 0.35 -0.3
4,067,872 - Shewana3_3398 0.40 +0.1
4,067,900 + Shewana3_3398 0.43 +0.6
4,067,900 + Shewana3_3398 0.43 +0.5
4,067,939 - Shewana3_3398 0.47 -0.4
4,067,959 + Shewana3_3398 0.49 -0.7
4,068,223 - Shewana3_3398 0.76 +0.3
4,068,223 - Shewana3_3398 0.76 +0.0
4,068,237 + Shewana3_3398 0.77 -0.8
4,068,363 + -0.9

Or see this region's nucleotide sequence