Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3379 and Shewana3_3380 are separated by 180 nucleotides Shewana3_3380 and Shewana3_3381 are separated by 175 nucleotides Shewana3_3381 and Shewana3_3382 are separated by 200 nucleotides Shewana3_3382 and Shewana3_3383 are separated by 57 nucleotides
Shewana3_3379: Shewana3_3379 - aldo/keto reductase (RefSeq), at 4,050,318 to 4,051,358
_3379
Shewana3_3380: Shewana3_3380 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 4,051,539 to 4,051,961
_3380
Shewana3_3381: Shewana3_3381 - hypothetical protein (RefSeq), at 4,052,137 to 4,052,664
_3381
Shewana3_3382: Shewana3_3382 - hypothetical protein (RefSeq), at 4,052,865 to 4,053,155
_3382
Shewana3_3383: Shewana3_3383 - TonB-dependent receptor, plug (RefSeq), at 4,053,213 to 4,055,489
_3383
Position (kb)
4052
4053 Strain fitness (log2 ratio)
-1
0
1 at 4051.146 kb on + strand, within Shewana3_3379 at 4051.191 kb on + strand, within Shewana3_3379 at 4051.199 kb on - strand, within Shewana3_3379 at 4051.248 kb on + strand, within Shewana3_3379 at 4051.248 kb on + strand, within Shewana3_3379 at 4051.248 kb on + strand, within Shewana3_3379 at 4051.279 kb on + strand at 4051.287 kb on - strand at 4051.287 kb on - strand at 4051.359 kb on - strand at 4051.417 kb on - strand at 4051.446 kb on - strand at 4051.682 kb on + strand, within Shewana3_3380 at 4051.695 kb on - strand, within Shewana3_3380 at 4051.835 kb on - strand, within Shewana3_3380 at 4051.873 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.900 kb on - strand, within Shewana3_3380 at 4052.363 kb on - strand, within Shewana3_3381 at 4052.912 kb on + strand, within Shewana3_3382 at 4052.961 kb on + strand, within Shewana3_3382 at 4053.000 kb on - strand, within Shewana3_3382 at 4053.046 kb on - strand, within Shewana3_3382 at 4053.135 kb on - strand at 4053.217 kb on + strand at 4053.227 kb on + strand at 4053.259 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,051,146 + Shewana3_3379 0.80 -0.8 4,051,191 + Shewana3_3379 0.84 -0.2 4,051,199 - Shewana3_3379 0.85 -1.0 4,051,248 + Shewana3_3379 0.89 +0.5 4,051,248 + Shewana3_3379 0.89 +1.1 4,051,248 + Shewana3_3379 0.89 +0.6 4,051,279 + +0.6 4,051,287 - -1.0 4,051,287 - +0.2 4,051,359 - -1.3 4,051,417 - +0.1 4,051,446 - +0.3 4,051,682 + Shewana3_3380 0.34 -0.1 4,051,695 - Shewana3_3380 0.37 +0.4 4,051,835 - Shewana3_3380 0.70 -0.6 4,051,873 + Shewana3_3380 0.79 +0.6 4,051,885 + Shewana3_3380 0.82 -1.0 4,051,885 + Shewana3_3380 0.82 -0.1 4,051,900 - Shewana3_3380 0.85 -0.3 4,052,363 - Shewana3_3381 0.43 -1.4 4,052,912 + Shewana3_3382 0.16 -0.0 4,052,961 + Shewana3_3382 0.33 -0.9 4,053,000 - Shewana3_3382 0.46 +0.6 4,053,046 - Shewana3_3382 0.62 +0.2 4,053,135 - +0.3 4,053,217 + +0.5 4,053,227 + +0.8 4,053,259 + -1.5
Or see this region's nucleotide sequence