Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3371 and Shewana3_3372 are separated by 12 nucleotides Shewana3_3372 and Shewana3_3373 are separated by 97 nucleotides
Shewana3_3371: Shewana3_3371 - hypothetical protein (RefSeq), at 4,042,959 to 4,043,522
_3371
Shewana3_3372: Shewana3_3372 - no description, at 4,043,535 to 4,043,882
_3372
Shewana3_3373: Shewana3_3373 - Na(+)-translocating NADH-quinone reductase subunit F (RefSeq), at 4,043,980 to 4,045,197
_3373
Position (kb)
4043
4044 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4042.630 kb on - strand at 4042.630 kb on - strand at 4042.667 kb on - strand at 4042.847 kb on + strand at 4042.892 kb on + strand at 4042.897 kb on + strand at 4042.897 kb on - strand at 4042.999 kb on + strand at 4043.002 kb on - strand at 4043.262 kb on + strand, within Shewana3_3371 at 4043.269 kb on + strand, within Shewana3_3371 at 4043.380 kb on - strand, within Shewana3_3371 at 4043.384 kb on + strand, within Shewana3_3371 at 4043.490 kb on - strand at 4043.507 kb on + strand at 4043.569 kb on + strand at 4043.694 kb on - strand, within Shewana3_3372 at 4043.701 kb on + strand, within Shewana3_3372 at 4043.701 kb on + strand, within Shewana3_3372 at 4043.813 kb on + strand, within Shewana3_3372 at 4043.938 kb on + strand at 4044.055 kb on + strand at 4044.099 kb on - strand at 4044.314 kb on + strand, within Shewana3_3373 at 4044.356 kb on - strand, within Shewana3_3373 at 4044.435 kb on + strand, within Shewana3_3373 at 4044.454 kb on - strand, within Shewana3_3373 at 4044.675 kb on - strand, within Shewana3_3373 at 4044.679 kb on + strand, within Shewana3_3373
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,042,630 - +0.3 4,042,630 - -1.7 4,042,667 - -2.3 4,042,847 + +0.2 4,042,892 + +0.5 4,042,897 + -0.0 4,042,897 - -1.1 4,042,999 + -0.0 4,043,002 - +0.8 4,043,262 + Shewana3_3371 0.54 -2.6 4,043,269 + Shewana3_3371 0.55 +0.2 4,043,380 - Shewana3_3371 0.75 -2.3 4,043,384 + Shewana3_3371 0.75 -0.2 4,043,490 - -0.9 4,043,507 + -0.4 4,043,569 + +0.3 4,043,694 - Shewana3_3372 0.46 -1.6 4,043,701 + Shewana3_3372 0.48 +0.7 4,043,701 + Shewana3_3372 0.48 +0.6 4,043,813 + Shewana3_3372 0.80 +0.6 4,043,938 + -3.0 4,044,055 + -0.5 4,044,099 - +0.7 4,044,314 + Shewana3_3373 0.27 -0.8 4,044,356 - Shewana3_3373 0.31 +0.8 4,044,435 + Shewana3_3373 0.37 -0.8 4,044,454 - Shewana3_3373 0.39 +0.5 4,044,675 - Shewana3_3373 0.57 +1.0 4,044,679 + Shewana3_3373 0.57 +0.6
Or see this region's nucleotide sequence