Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3305 and Shewana3_3306 overlap by 11 nucleotides Shewana3_3306 and Shewana3_3307 overlap by 4 nucleotides Shewana3_3307 and Shewana3_3308 are separated by 5 nucleotides
Shewana3_3305: Shewana3_3305 - MltA-interacting MipA family protein (RefSeq), at 3,967,862 to 3,968,704
_3305
Shewana3_3306: Shewana3_3306 - hypothetical protein (RefSeq), at 3,968,694 to 3,969,113
_3306
Shewana3_3307: Shewana3_3307 - two component transcriptional regulator (RefSeq), at 3,969,110 to 3,969,832
_3307
Shewana3_3308: Shewana3_3308 - ATPase domain-containing protein (RefSeq), at 3,969,838 to 3,971,067
_3308
Position (kb)
3968
3969
3970 Strain fitness (log2 ratio)
-2
-1
0
1 at 3967.832 kb on + strand at 3967.901 kb on + strand at 3968.153 kb on - strand, within Shewana3_3305 at 3968.153 kb on - strand, within Shewana3_3305 at 3968.153 kb on - strand, within Shewana3_3305 at 3968.198 kb on - strand, within Shewana3_3305 at 3968.386 kb on + strand, within Shewana3_3305 at 3968.430 kb on + strand, within Shewana3_3305 at 3968.457 kb on + strand, within Shewana3_3305 at 3968.478 kb on + strand, within Shewana3_3305 at 3968.486 kb on - strand, within Shewana3_3305 at 3968.819 kb on - strand, within Shewana3_3306 at 3968.899 kb on + strand, within Shewana3_3306 at 3968.899 kb on + strand, within Shewana3_3306 at 3968.907 kb on - strand, within Shewana3_3306 at 3969.039 kb on + strand, within Shewana3_3306 at 3969.059 kb on + strand, within Shewana3_3306 at 3969.135 kb on - strand at 3969.184 kb on + strand, within Shewana3_3307 at 3969.413 kb on - strand, within Shewana3_3307 at 3969.558 kb on + strand, within Shewana3_3307 at 3969.566 kb on - strand, within Shewana3_3307 at 3969.710 kb on - strand, within Shewana3_3307 at 3969.769 kb on - strand at 3969.834 kb on - strand at 3970.091 kb on + strand, within Shewana3_3308 at 3970.096 kb on - strand, within Shewana3_3308 at 3970.096 kb on - strand, within Shewana3_3308
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,967,832 + +0.5 3,967,901 + -1.6 3,968,153 - Shewana3_3305 0.35 -0.4 3,968,153 - Shewana3_3305 0.35 +0.4 3,968,153 - Shewana3_3305 0.35 +0.6 3,968,198 - Shewana3_3305 0.40 -1.6 3,968,386 + Shewana3_3305 0.62 -1.4 3,968,430 + Shewana3_3305 0.67 -1.6 3,968,457 + Shewana3_3305 0.71 -0.8 3,968,478 + Shewana3_3305 0.73 -0.3 3,968,486 - Shewana3_3305 0.74 -2.0 3,968,819 - Shewana3_3306 0.30 -0.9 3,968,899 + Shewana3_3306 0.49 +0.0 3,968,899 + Shewana3_3306 0.49 +0.6 3,968,907 - Shewana3_3306 0.51 -2.5 3,969,039 + Shewana3_3306 0.82 -0.3 3,969,059 + Shewana3_3306 0.87 -0.9 3,969,135 - -0.1 3,969,184 + Shewana3_3307 0.10 -1.8 3,969,413 - Shewana3_3307 0.42 -1.5 3,969,558 + Shewana3_3307 0.62 -0.3 3,969,566 - Shewana3_3307 0.63 -2.7 3,969,710 - Shewana3_3307 0.83 -0.1 3,969,769 - +1.0 3,969,834 - -0.9 3,970,091 + Shewana3_3308 0.21 -1.5 3,970,096 - Shewana3_3308 0.21 -0.3 3,970,096 - Shewana3_3308 0.21 -1.7
Or see this region's nucleotide sequence