Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3286
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | LB |
|---|---|---|---|---|---|
| remove | |||||
| 3,929,250 | + | +0.4 | |||
| 3,929,350 | + | +1.1 | |||
| 3,929,382 | + | +0.8 | |||
| 3,929,460 | - | +0.6 | |||
| 3,929,628 | - | +0.1 | |||
| 3,929,649 | + | +0.0 | |||
| 3,929,859 | - | +0.4 | |||
| 3,930,100 | + | -1.1 | |||
| 3,930,101 | - | +0.9 | |||
| 3,930,176 | + | +1.0 | |||
| 3,930,184 | - | +0.8 | |||
| 3,930,184 | - | +0.6 | |||
| 3,930,291 | + | Shewana3_3286 | 0.12 | +0.4 | |
| 3,930,416 | + | Shewana3_3286 | 0.25 | +0.5 | |
| 3,930,424 | - | Shewana3_3286 | 0.25 | -1.0 | |
| 3,930,688 | + | Shewana3_3286 | 0.53 | +0.9 | |
| 3,930,793 | + | Shewana3_3286 | 0.64 | +0.6 | |
| 3,930,794 | + | Shewana3_3286 | 0.64 | +0.7 | |
| 3,930,843 | - | Shewana3_3286 | 0.69 | +0.7 | |
| 3,930,880 | + | Shewana3_3286 | 0.73 | +0.2 | |
| 3,930,996 | - | Shewana3_3286 | 0.85 | +0.5 | |
| 3,931,112 | - | +0.2 | |||
| 3,931,167 | + | +0.4 | |||
| 3,931,172 | + | +1.1 | |||
| 3,931,172 | + | -1.2 | |||
| 3,931,198 | + | -1.6 | |||
| 3,931,242 | - | -0.5 | |||
| 3,931,715 | + | Shewana3_3287 | 0.13 | +0.3 | |
| 3,931,758 | + | Shewana3_3287 | 0.15 | -0.4 | |
| 3,931,820 | + | Shewana3_3287 | 0.18 | +0.2 | |
| 3,931,941 | + | Shewana3_3287 | 0.23 | -0.3 | |
| 3,932,071 | - | Shewana3_3287 | 0.29 | -0.2 |
Or see this region's nucleotide sequence