Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3264 and Shewana3_3265 are separated by 154 nucleotides Shewana3_3265 and Shewana3_3266 are separated by 256 nucleotides Shewana3_3266 and Shewana3_3267 are separated by 835 nucleotides
Shewana3_3264: Shewana3_3264 - hypothetical protein (RefSeq), at 3,906,464 to 3,907,510
_3264
Shewana3_3265: Shewana3_3265 - hypothetical protein (RefSeq), at 3,907,665 to 3,908,021
_3265
Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571
_3266
Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631
_3267
Position (kb)
3908
3909 Strain fitness (log2 ratio)
-1
0
1 at 3907.552 kb on + strand at 3907.689 kb on + strand at 3907.695 kb on + strand at 3907.728 kb on - strand, within Shewana3_3265 at 3907.792 kb on + strand, within Shewana3_3265 at 3907.933 kb on - strand, within Shewana3_3265 at 3907.948 kb on + strand, within Shewana3_3265 at 3908.006 kb on - strand at 3908.087 kb on + strand at 3908.087 kb on + strand at 3908.171 kb on + strand at 3908.381 kb on - strand, within Shewana3_3266 at 3908.391 kb on - strand, within Shewana3_3266 at 3908.391 kb on - strand, within Shewana3_3266 at 3908.498 kb on + strand, within Shewana3_3266 at 3908.608 kb on - strand at 3908.652 kb on - strand at 3908.655 kb on + strand at 3908.722 kb on - strand at 3908.850 kb on - strand at 3908.893 kb on - strand at 3909.062 kb on + strand at 3909.062 kb on + strand at 3909.174 kb on - strand at 3909.198 kb on + strand at 3909.307 kb on + strand at 3909.343 kb on + strand at 3909.414 kb on + strand at 3909.414 kb on + strand at 3909.494 kb on - strand, within Shewana3_3267
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,907,552 + +0.5 3,907,689 + +0.2 3,907,695 + -1.3 3,907,728 - Shewana3_3265 0.18 -0.3 3,907,792 + Shewana3_3265 0.36 -0.6 3,907,933 - Shewana3_3265 0.75 -0.9 3,907,948 + Shewana3_3265 0.79 -0.1 3,908,006 - -1.2 3,908,087 + +1.5 3,908,087 + +1.2 3,908,171 + +0.1 3,908,381 - Shewana3_3266 0.35 -1.5 3,908,391 - Shewana3_3266 0.38 -0.1 3,908,391 - Shewana3_3266 0.38 -0.1 3,908,498 + Shewana3_3266 0.75 +1.7 3,908,608 - +0.4 3,908,652 - +0.4 3,908,655 + -0.3 3,908,722 - +0.1 3,908,850 - -0.0 3,908,893 - -0.9 3,909,062 + -1.2 3,909,062 + -0.9 3,909,174 - -0.7 3,909,198 + +0.2 3,909,307 + +0.5 3,909,343 + -0.4 3,909,414 + -0.3 3,909,414 + +0.4 3,909,494 - Shewana3_3267 0.39 +0.4
Or see this region's nucleotide sequence