Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3251 and Shewana3_3252 are separated by 21 nucleotides Shewana3_3252 and Shewana3_3253 are separated by 58 nucleotides Shewana3_3253 and Shewana3_3254 overlap by 1 nucleotides Shewana3_3254 and Shewana3_3255 are separated by 10 nucleotides
Shewana3_3251: Shewana3_3251 - aldehyde dehydrogenase (RefSeq), at 3,892,741 to 3,894,165
_3251
Shewana3_3252: Shewana3_3252 - TetR family transcriptional regulator (RefSeq), at 3,894,187 to 3,894,789
_3252
Shewana3_3253: Shewana3_3253 - curli production assembly/transport component CsgG (RefSeq), at 3,894,848 to 3,895,654
_3253
Shewana3_3254: Shewana3_3254 - curli production assembly/transport component CsgF, putative (RefSeq), at 3,895,654 to 3,896,049
_3254
Shewana3_3255: Shewana3_3255 - curli production assembly/transport component CsgE, putative (RefSeq), at 3,896,060 to 3,896,470
_3255
Position (kb)
3894
3895
3896 Strain fitness (log2 ratio)
-2
-1
0
1 at 3894.021 kb on - strand, within Shewana3_3251 at 3894.068 kb on - strand at 3894.261 kb on - strand, within Shewana3_3252 at 3894.367 kb on - strand, within Shewana3_3252 at 3894.445 kb on + strand, within Shewana3_3252 at 3894.478 kb on - strand, within Shewana3_3252 at 3894.762 kb on + strand at 3895.005 kb on + strand, within Shewana3_3253 at 3895.043 kb on + strand, within Shewana3_3253 at 3895.051 kb on - strand, within Shewana3_3253 at 3895.195 kb on + strand, within Shewana3_3253 at 3895.452 kb on + strand, within Shewana3_3253 at 3895.452 kb on + strand, within Shewana3_3253 at 3895.452 kb on + strand, within Shewana3_3253 at 3895.452 kb on + strand, within Shewana3_3253 at 3895.452 kb on + strand, within Shewana3_3253 at 3895.460 kb on - strand, within Shewana3_3253 at 3895.460 kb on - strand, within Shewana3_3253 at 3895.460 kb on - strand, within Shewana3_3253 at 3895.526 kb on + strand, within Shewana3_3253 at 3895.559 kb on + strand, within Shewana3_3253 at 3895.657 kb on - strand at 3895.815 kb on + strand, within Shewana3_3254 at 3896.196 kb on + strand, within Shewana3_3255 at 3896.233 kb on - strand, within Shewana3_3255 at 3896.272 kb on + strand, within Shewana3_3255 at 3896.279 kb on + strand, within Shewana3_3255 at 3896.308 kb on + strand, within Shewana3_3255 at 3896.333 kb on - strand, within Shewana3_3255 at 3896.536 kb on - strand at 3896.569 kb on - strand at 3896.569 kb on - strand at 3896.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,894,021 - Shewana3_3251 0.90 -1.9 3,894,068 - -1.6 3,894,261 - Shewana3_3252 0.12 -0.7 3,894,367 - Shewana3_3252 0.30 -1.2 3,894,445 + Shewana3_3252 0.43 +0.2 3,894,478 - Shewana3_3252 0.48 -0.2 3,894,762 + +0.0 3,895,005 + Shewana3_3253 0.19 -0.3 3,895,043 + Shewana3_3253 0.24 -1.5 3,895,051 - Shewana3_3253 0.25 -0.3 3,895,195 + Shewana3_3253 0.43 -1.0 3,895,452 + Shewana3_3253 0.75 -0.1 3,895,452 + Shewana3_3253 0.75 -1.1 3,895,452 + Shewana3_3253 0.75 -0.0 3,895,452 + Shewana3_3253 0.75 -0.3 3,895,452 + Shewana3_3253 0.75 -0.8 3,895,460 - Shewana3_3253 0.76 +0.7 3,895,460 - Shewana3_3253 0.76 +0.1 3,895,460 - Shewana3_3253 0.76 +0.0 3,895,526 + Shewana3_3253 0.84 +0.6 3,895,559 + Shewana3_3253 0.88 +0.1 3,895,657 - -0.8 3,895,815 + Shewana3_3254 0.41 -2.4 3,896,196 + Shewana3_3255 0.33 +0.3 3,896,233 - Shewana3_3255 0.42 -1.7 3,896,272 + Shewana3_3255 0.52 -1.3 3,896,279 + Shewana3_3255 0.53 -0.9 3,896,308 + Shewana3_3255 0.60 -0.7 3,896,333 - Shewana3_3255 0.66 -1.8 3,896,536 - +1.1 3,896,569 - +0.6 3,896,569 - -1.2 3,896,599 + -0.5
Or see this region's nucleotide sequence