Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3245 and Shewana3_3246 are separated by 198 nucleotides Shewana3_3246 and Shewana3_3247 are separated by 124 nucleotides Shewana3_3247 and Shewana3_3248 are separated by 2 nucleotides Shewana3_3248 and Shewana3_3249 are separated by 150 nucleotides
Shewana3_3245: Shewana3_3245 - hypothetical protein (RefSeq), at 3,889,024 to 3,889,359
_3245
Shewana3_3246: Shewana3_3246 - hypothetical protein (RefSeq), at 3,889,558 to 3,890,109
_3246
Shewana3_3247: Shewana3_3247 - extracellular solute-binding protein (RefSeq), at 3,890,234 to 3,891,091
_3247
Shewana3_3248: Shewana3_3248 - UspA domain-containing protein (RefSeq), at 3,891,094 to 3,891,543
_3248
Shewana3_3249: Shewana3_3249 - UspA domain-containing protein (RefSeq), at 3,891,694 to 3,892,125
_3249
Position (kb)
3890
3891
3892 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3889.251 kb on + strand, within Shewana3_3245 at 3889.310 kb on + strand, within Shewana3_3245 at 3889.346 kb on + strand at 3889.466 kb on - strand at 3889.828 kb on - strand, within Shewana3_3246 at 3890.191 kb on + strand at 3890.229 kb on - strand at 3890.400 kb on + strand, within Shewana3_3247 at 3890.431 kb on + strand, within Shewana3_3247 at 3890.468 kb on + strand, within Shewana3_3247 at 3890.481 kb on + strand, within Shewana3_3247 at 3890.518 kb on + strand, within Shewana3_3247 at 3890.603 kb on + strand, within Shewana3_3247 at 3890.951 kb on - strand, within Shewana3_3247 at 3891.051 kb on - strand at 3891.068 kb on + strand at 3891.358 kb on + strand, within Shewana3_3248 at 3891.365 kb on + strand, within Shewana3_3248 at 3891.677 kb on + strand at 3891.805 kb on + strand, within Shewana3_3249 at 3891.869 kb on - strand, within Shewana3_3249 at 3891.935 kb on + strand, within Shewana3_3249
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,889,251 + Shewana3_3245 0.68 -1.0 3,889,310 + Shewana3_3245 0.85 -1.4 3,889,346 + -0.8 3,889,466 - +1.2 3,889,828 - Shewana3_3246 0.49 -0.7 3,890,191 + +0.5 3,890,229 - +0.0 3,890,400 + Shewana3_3247 0.19 -1.7 3,890,431 + Shewana3_3247 0.23 -1.5 3,890,468 + Shewana3_3247 0.27 -0.6 3,890,481 + Shewana3_3247 0.29 -0.6 3,890,518 + Shewana3_3247 0.33 +1.0 3,890,603 + Shewana3_3247 0.43 -1.8 3,890,951 - Shewana3_3247 0.84 -2.8 3,891,051 - +0.8 3,891,068 + -0.6 3,891,358 + Shewana3_3248 0.59 +0.2 3,891,365 + Shewana3_3248 0.60 -0.4 3,891,677 + +0.2 3,891,805 + Shewana3_3249 0.26 +1.0 3,891,869 - Shewana3_3249 0.41 +0.9 3,891,935 + Shewana3_3249 0.56 +2.0
Or see this region's nucleotide sequence