Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hmuV and Shewana3_3242 are separated by 82 nucleotides Shewana3_3242 and Shewana3_3243 overlap by 4 nucleotides Shewana3_3243 and Shewana3_3244 are separated by 111 nucleotides
Shewana3_3241: hmuV - hemin importer ATP-binding subunit (RefSeq), at 3,885,836 to 3,886,654
hmuV
Shewana3_3242: Shewana3_3242 - hypothetical protein (RefSeq), at 3,886,737 to 3,887,078
_3242
Shewana3_3243: Shewana3_3243 - hypothetical protein (RefSeq), at 3,887,075 to 3,887,440
_3243
Shewana3_3244: Shewana3_3244 - FAD dependent oxidoreductase (RefSeq), at 3,887,552 to 3,889,027
_3244
Position (kb)
3887
3888 Strain fitness (log2 ratio)
-2
-1
0
1 at 3886.142 kb on + strand, within hmuV at 3886.150 kb on - strand, within hmuV at 3886.329 kb on + strand, within hmuV at 3886.453 kb on + strand, within hmuV at 3886.461 kb on - strand, within hmuV at 3886.494 kb on - strand, within hmuV at 3886.529 kb on - strand, within hmuV at 3886.695 kb on + strand at 3886.698 kb on - strand at 3886.734 kb on - strand at 3886.734 kb on - strand at 3886.792 kb on - strand, within Shewana3_3242 at 3886.843 kb on + strand, within Shewana3_3242 at 3887.145 kb on + strand, within Shewana3_3243 at 3887.145 kb on + strand, within Shewana3_3243 at 3887.181 kb on - strand, within Shewana3_3243 at 3887.220 kb on - strand, within Shewana3_3243 at 3887.521 kb on + strand at 3887.616 kb on + strand at 3887.628 kb on + strand at 3887.636 kb on - strand at 3887.717 kb on + strand, within Shewana3_3244 at 3887.751 kb on + strand, within Shewana3_3244 at 3887.911 kb on - strand, within Shewana3_3244 at 3887.948 kb on - strand, within Shewana3_3244 at 3888.132 kb on + strand, within Shewana3_3244 at 3888.296 kb on + strand, within Shewana3_3244 at 3888.304 kb on - strand, within Shewana3_3244 at 3888.347 kb on + strand, within Shewana3_3244 at 3888.415 kb on + strand, within Shewana3_3244
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,886,142 + hmuV Shewana3_3241 0.37 -1.3 3,886,150 - hmuV Shewana3_3241 0.38 -0.1 3,886,329 + hmuV Shewana3_3241 0.60 -0.0 3,886,453 + hmuV Shewana3_3241 0.75 -0.2 3,886,461 - hmuV Shewana3_3241 0.76 -2.4 3,886,494 - hmuV Shewana3_3241 0.80 -0.8 3,886,529 - hmuV Shewana3_3241 0.85 +0.2 3,886,695 + -0.5 3,886,698 - +0.3 3,886,734 - -1.3 3,886,734 - +0.3 3,886,792 - Shewana3_3242 0.16 -0.5 3,886,843 + Shewana3_3242 0.31 -0.4 3,887,145 + Shewana3_3243 0.19 -0.9 3,887,145 + Shewana3_3243 0.19 -1.4 3,887,181 - Shewana3_3243 0.29 -1.0 3,887,220 - Shewana3_3243 0.40 -0.7 3,887,521 + -1.0 3,887,616 + -2.0 3,887,628 + -0.5 3,887,636 - -1.6 3,887,717 + Shewana3_3244 0.11 -1.9 3,887,751 + Shewana3_3244 0.13 -1.4 3,887,911 - Shewana3_3244 0.24 +0.1 3,887,948 - Shewana3_3244 0.27 +0.7 3,888,132 + Shewana3_3244 0.39 -0.1 3,888,296 + Shewana3_3244 0.50 +0.2 3,888,304 - Shewana3_3244 0.51 -0.5 3,888,347 + Shewana3_3244 0.54 -1.8 3,888,415 + Shewana3_3244 0.58 +1.4
Or see this region's nucleotide sequence