Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3165

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3164 and Shewana3_3165 are separated by 8 nucleotidesShewana3_3165 and Shewana3_3166 are separated by 11 nucleotidesShewana3_3166 and Shewana3_R0118 are separated by 573 nucleotides Shewana3_3164: Shewana3_3164 - sodium ion-translocating decarboxylase, beta subunit (RefSeq), at 3,796,081 to 3,797,211 _3164 Shewana3_3165: Shewana3_3165 - oxaloacetate decarboxylase (RefSeq), at 3,797,220 to 3,799,055 _3165 Shewana3_3166: Shewana3_3166 - sodium pump decarboxylases, gamma subunit (RefSeq), at 3,799,067 to 3,799,324 _3166 Shewana3_R0118: Shewana3_R0118 - 5S ribosomal RNA (RefSeq), at 3,799,898 to 3,800,017 _R0118 Position (kb) 3797 3798 3799 3800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3796.454 kb on + strand, within Shewana3_3164at 3796.516 kb on + strand, within Shewana3_3164at 3796.516 kb on + strand, within Shewana3_3164at 3796.609 kb on - strand, within Shewana3_3164at 3796.611 kb on + strand, within Shewana3_3164at 3796.744 kb on - strand, within Shewana3_3164at 3797.000 kb on + strand, within Shewana3_3164at 3797.008 kb on - strand, within Shewana3_3164at 3797.099 kb on - strandat 3797.121 kb on + strandat 3797.124 kb on - strandat 3797.151 kb on - strandat 3797.508 kb on + strand, within Shewana3_3165at 3797.597 kb on - strand, within Shewana3_3165at 3797.768 kb on - strand, within Shewana3_3165at 3798.068 kb on + strand, within Shewana3_3165at 3798.182 kb on - strand, within Shewana3_3165at 3798.182 kb on - strand, within Shewana3_3165at 3798.258 kb on - strand, within Shewana3_3165at 3798.402 kb on - strand, within Shewana3_3165at 3798.404 kb on - strand, within Shewana3_3165at 3798.475 kb on - strand, within Shewana3_3165at 3798.475 kb on - strand, within Shewana3_3165at 3798.578 kb on + strand, within Shewana3_3165at 3798.581 kb on - strand, within Shewana3_3165at 3798.778 kb on - strand, within Shewana3_3165at 3798.853 kb on - strand, within Shewana3_3165at 3798.929 kb on + strandat 3799.509 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,796,454 + Shewana3_3164 0.33 +0.0
3,796,516 + Shewana3_3164 0.38 -0.2
3,796,516 + Shewana3_3164 0.38 -1.0
3,796,609 - Shewana3_3164 0.47 -0.2
3,796,611 + Shewana3_3164 0.47 -0.6
3,796,744 - Shewana3_3164 0.59 +1.6
3,797,000 + Shewana3_3164 0.81 -2.9
3,797,008 - Shewana3_3164 0.82 -1.5
3,797,099 - -1.0
3,797,121 + -1.0
3,797,124 - +0.1
3,797,151 - -0.4
3,797,508 + Shewana3_3165 0.16 -0.3
3,797,597 - Shewana3_3165 0.21 -1.7
3,797,768 - Shewana3_3165 0.30 -1.0
3,798,068 + Shewana3_3165 0.46 -1.2
3,798,182 - Shewana3_3165 0.52 +0.1
3,798,182 - Shewana3_3165 0.52 -2.1
3,798,258 - Shewana3_3165 0.57 -1.1
3,798,402 - Shewana3_3165 0.64 -1.6
3,798,404 - Shewana3_3165 0.64 -1.3
3,798,475 - Shewana3_3165 0.68 -0.3
3,798,475 - Shewana3_3165 0.68 -0.8
3,798,578 + Shewana3_3165 0.74 -0.9
3,798,581 - Shewana3_3165 0.74 +0.3
3,798,778 - Shewana3_3165 0.85 -2.2
3,798,853 - Shewana3_3165 0.89 -0.5
3,798,929 + +2.0
3,799,509 + -1.7

Or see this region's nucleotide sequence