Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3164 and Shewana3_3165 are separated by 8 nucleotides Shewana3_3165 and Shewana3_3166 are separated by 11 nucleotides Shewana3_3166 and Shewana3_R0118 are separated by 573 nucleotides
Shewana3_3164: Shewana3_3164 - sodium ion-translocating decarboxylase, beta subunit (RefSeq), at 3,796,081 to 3,797,211
_3164
Shewana3_3165: Shewana3_3165 - oxaloacetate decarboxylase (RefSeq), at 3,797,220 to 3,799,055
_3165
Shewana3_3166: Shewana3_3166 - sodium pump decarboxylases, gamma subunit (RefSeq), at 3,799,067 to 3,799,324
_3166
Shewana3_R0118: Shewana3_R0118 - 5S ribosomal RNA (RefSeq), at 3,799,898 to 3,800,017
_R0118
Position (kb)
3797
3798
3799
3800 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3796.454 kb on + strand, within Shewana3_3164 at 3796.516 kb on + strand, within Shewana3_3164 at 3796.516 kb on + strand, within Shewana3_3164 at 3796.609 kb on - strand, within Shewana3_3164 at 3796.611 kb on + strand, within Shewana3_3164 at 3796.744 kb on - strand, within Shewana3_3164 at 3797.000 kb on + strand, within Shewana3_3164 at 3797.008 kb on - strand, within Shewana3_3164 at 3797.099 kb on - strand at 3797.121 kb on + strand at 3797.124 kb on - strand at 3797.151 kb on - strand at 3797.508 kb on + strand, within Shewana3_3165 at 3797.597 kb on - strand, within Shewana3_3165 at 3797.768 kb on - strand, within Shewana3_3165 at 3798.068 kb on + strand, within Shewana3_3165 at 3798.182 kb on - strand, within Shewana3_3165 at 3798.182 kb on - strand, within Shewana3_3165 at 3798.258 kb on - strand, within Shewana3_3165 at 3798.402 kb on - strand, within Shewana3_3165 at 3798.404 kb on - strand, within Shewana3_3165 at 3798.475 kb on - strand, within Shewana3_3165 at 3798.475 kb on - strand, within Shewana3_3165 at 3798.578 kb on + strand, within Shewana3_3165 at 3798.581 kb on - strand, within Shewana3_3165 at 3798.778 kb on - strand, within Shewana3_3165 at 3798.853 kb on - strand, within Shewana3_3165 at 3798.929 kb on + strand at 3799.509 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,796,454 + Shewana3_3164 0.33 +0.0 3,796,516 + Shewana3_3164 0.38 -0.2 3,796,516 + Shewana3_3164 0.38 -1.0 3,796,609 - Shewana3_3164 0.47 -0.2 3,796,611 + Shewana3_3164 0.47 -0.6 3,796,744 - Shewana3_3164 0.59 +1.6 3,797,000 + Shewana3_3164 0.81 -2.9 3,797,008 - Shewana3_3164 0.82 -1.5 3,797,099 - -1.0 3,797,121 + -1.0 3,797,124 - +0.1 3,797,151 - -0.4 3,797,508 + Shewana3_3165 0.16 -0.3 3,797,597 - Shewana3_3165 0.21 -1.7 3,797,768 - Shewana3_3165 0.30 -1.0 3,798,068 + Shewana3_3165 0.46 -1.2 3,798,182 - Shewana3_3165 0.52 +0.1 3,798,182 - Shewana3_3165 0.52 -2.1 3,798,258 - Shewana3_3165 0.57 -1.1 3,798,402 - Shewana3_3165 0.64 -1.6 3,798,404 - Shewana3_3165 0.64 -1.3 3,798,475 - Shewana3_3165 0.68 -0.3 3,798,475 - Shewana3_3165 0.68 -0.8 3,798,578 + Shewana3_3165 0.74 -0.9 3,798,581 - Shewana3_3165 0.74 +0.3 3,798,778 - Shewana3_3165 0.85 -2.2 3,798,853 - Shewana3_3165 0.89 -0.5 3,798,929 + +2.0 3,799,509 + -1.7
Or see this region's nucleotide sequence