Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3107 and Shewana3_3108 are separated by 23 nucleotides Shewana3_3108 and Shewana3_3109 are separated by 185 nucleotides Shewana3_3109 and Shewana3_3110 are separated by 64 nucleotides
Shewana3_3107: Shewana3_3107 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,726,742 to 3,728,232
_3107
Shewana3_3108: Shewana3_3108 - protein of unknown function DUF861, cupin_3 (RefSeq), at 3,728,256 to 3,728,615
_3108
Shewana3_3109: Shewana3_3109 - hypothetical protein (RefSeq), at 3,728,801 to 3,729,523
_3109
Shewana3_3110: Shewana3_3110 - N-acetylglucosamine transporter nagP (from data) , at 3,729,588 to 3,730,886
_3110
Position (kb)
3728
3729
3730 Strain fitness (log2 ratio)
-2
-1
0
1 at 3727.851 kb on + strand, within Shewana3_3107 at 3727.900 kb on - strand, within Shewana3_3107 at 3727.929 kb on - strand, within Shewana3_3107 at 3727.931 kb on + strand, within Shewana3_3107 at 3728.018 kb on + strand, within Shewana3_3107 at 3728.023 kb on + strand, within Shewana3_3107 at 3728.029 kb on - strand, within Shewana3_3107 at 3728.037 kb on + strand, within Shewana3_3107 at 3728.042 kb on + strand, within Shewana3_3107 at 3728.137 kb on - strand at 3728.196 kb on + strand at 3728.379 kb on - strand, within Shewana3_3108 at 3728.504 kb on + strand, within Shewana3_3108 at 3728.512 kb on - strand, within Shewana3_3108 at 3728.557 kb on - strand, within Shewana3_3108 at 3729.080 kb on - strand, within Shewana3_3109 at 3729.086 kb on - strand, within Shewana3_3109 at 3729.212 kb on + strand, within Shewana3_3109 at 3729.339 kb on + strand, within Shewana3_3109 at 3729.358 kb on - strand, within Shewana3_3109 at 3729.358 kb on - strand, within Shewana3_3109 at 3729.619 kb on + strand at 3729.619 kb on + strand at 3729.619 kb on + strand at 3729.755 kb on - strand, within Shewana3_3110 at 3729.828 kb on + strand, within Shewana3_3110 at 3729.867 kb on - strand, within Shewana3_3110 at 3729.943 kb on - strand, within Shewana3_3110 at 3730.047 kb on - strand, within Shewana3_3110 at 3730.185 kb on + strand, within Shewana3_3110 at 3730.193 kb on - strand, within Shewana3_3110 at 3730.193 kb on - strand, within Shewana3_3110 at 3730.203 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110 at 3730.387 kb on - strand, within Shewana3_3110
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,727,851 + Shewana3_3107 0.74 -0.1 3,727,900 - Shewana3_3107 0.78 +0.1 3,727,929 - Shewana3_3107 0.80 +0.3 3,727,931 + Shewana3_3107 0.80 -1.8 3,728,018 + Shewana3_3107 0.86 -0.3 3,728,023 + Shewana3_3107 0.86 -0.0 3,728,029 - Shewana3_3107 0.86 +0.2 3,728,037 + Shewana3_3107 0.87 +0.3 3,728,042 + Shewana3_3107 0.87 -1.1 3,728,137 - +0.7 3,728,196 + +0.1 3,728,379 - Shewana3_3108 0.34 +0.9 3,728,504 + Shewana3_3108 0.69 +0.9 3,728,512 - Shewana3_3108 0.71 +0.6 3,728,557 - Shewana3_3108 0.84 -0.2 3,729,080 - Shewana3_3109 0.39 -1.0 3,729,086 - Shewana3_3109 0.39 +1.3 3,729,212 + Shewana3_3109 0.57 +0.8 3,729,339 + Shewana3_3109 0.74 +1.0 3,729,358 - Shewana3_3109 0.77 +0.2 3,729,358 - Shewana3_3109 0.77 -0.8 3,729,619 + +1.0 3,729,619 + -0.1 3,729,619 + -0.7 3,729,755 - Shewana3_3110 0.13 +0.9 3,729,828 + Shewana3_3110 0.18 -1.8 3,729,867 - Shewana3_3110 0.21 +0.4 3,729,943 - Shewana3_3110 0.27 +0.4 3,730,047 - Shewana3_3110 0.35 -2.6 3,730,185 + Shewana3_3110 0.46 -1.6 3,730,193 - Shewana3_3110 0.47 +0.2 3,730,193 - Shewana3_3110 0.47 -0.1 3,730,203 - Shewana3_3110 0.47 +1.0 3,730,387 - Shewana3_3110 0.62 +0.6 3,730,387 - Shewana3_3110 0.62 -0.0 3,730,387 - Shewana3_3110 0.62 -0.4
Or see this region's nucleotide sequence