Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3106 and Shewana3_3107 are separated by 50 nucleotides Shewana3_3107 and Shewana3_3108 are separated by 23 nucleotides Shewana3_3108 and Shewana3_3109 are separated by 185 nucleotides
Shewana3_3106: Shewana3_3106 - beta alanine--pyruvate transaminase (RefSeq), at 3,725,351 to 3,726,691
_3106
Shewana3_3107: Shewana3_3107 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,726,742 to 3,728,232
_3107
Shewana3_3108: Shewana3_3108 - protein of unknown function DUF861, cupin_3 (RefSeq), at 3,728,256 to 3,728,615
_3108
Shewana3_3109: Shewana3_3109 - hypothetical protein (RefSeq), at 3,728,801 to 3,729,523
_3109
Position (kb)
3726
3727
3728
3729 Strain fitness (log2 ratio)
-2
-1
0
1 at 3725.787 kb on + strand, within Shewana3_3106 at 3725.797 kb on + strand, within Shewana3_3106 at 3725.883 kb on + strand, within Shewana3_3106 at 3725.912 kb on - strand, within Shewana3_3106 at 3725.969 kb on + strand, within Shewana3_3106 at 3725.970 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3726.291 kb on + strand, within Shewana3_3106 at 3726.318 kb on + strand, within Shewana3_3106 at 3726.413 kb on - strand, within Shewana3_3106 at 3726.413 kb on - strand, within Shewana3_3106 at 3726.561 kb on + strand at 3726.561 kb on + strand at 3726.659 kb on + strand at 3726.996 kb on + strand, within Shewana3_3107 at 3727.047 kb on - strand, within Shewana3_3107 at 3727.252 kb on - strand, within Shewana3_3107 at 3727.311 kb on + strand, within Shewana3_3107 at 3727.364 kb on + strand, within Shewana3_3107 at 3727.437 kb on + strand, within Shewana3_3107 at 3727.555 kb on + strand, within Shewana3_3107 at 3727.563 kb on - strand, within Shewana3_3107 at 3727.573 kb on - strand, within Shewana3_3107 at 3727.851 kb on + strand, within Shewana3_3107 at 3727.900 kb on - strand, within Shewana3_3107 at 3727.929 kb on - strand, within Shewana3_3107 at 3727.931 kb on + strand, within Shewana3_3107 at 3728.018 kb on + strand, within Shewana3_3107 at 3728.023 kb on + strand, within Shewana3_3107 at 3728.029 kb on - strand, within Shewana3_3107 at 3728.037 kb on + strand, within Shewana3_3107 at 3728.042 kb on + strand, within Shewana3_3107 at 3728.137 kb on - strand at 3728.196 kb on + strand at 3728.379 kb on - strand, within Shewana3_3108 at 3728.504 kb on + strand, within Shewana3_3108 at 3728.512 kb on - strand, within Shewana3_3108 at 3728.557 kb on - strand, within Shewana3_3108 at 3729.080 kb on - strand, within Shewana3_3109 at 3729.086 kb on - strand, within Shewana3_3109 at 3729.212 kb on + strand, within Shewana3_3109
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,725,787 + Shewana3_3106 0.33 -0.0 3,725,797 + Shewana3_3106 0.33 +0.3 3,725,883 + Shewana3_3106 0.40 +0.6 3,725,912 - Shewana3_3106 0.42 +0.4 3,725,969 + Shewana3_3106 0.46 +0.4 3,725,970 + Shewana3_3106 0.46 -0.7 3,725,990 + Shewana3_3106 0.48 +0.1 3,725,990 + Shewana3_3106 0.48 -0.5 3,726,291 + Shewana3_3106 0.70 -0.5 3,726,318 + Shewana3_3106 0.72 +1.7 3,726,413 - Shewana3_3106 0.79 +0.4 3,726,413 - Shewana3_3106 0.79 +0.6 3,726,561 + -0.2 3,726,561 + +0.8 3,726,659 + +0.5 3,726,996 + Shewana3_3107 0.17 +0.4 3,727,047 - Shewana3_3107 0.20 -0.1 3,727,252 - Shewana3_3107 0.34 -1.9 3,727,311 + Shewana3_3107 0.38 +0.2 3,727,364 + Shewana3_3107 0.42 +0.7 3,727,437 + Shewana3_3107 0.47 +0.1 3,727,555 + Shewana3_3107 0.55 +0.1 3,727,563 - Shewana3_3107 0.55 -0.9 3,727,573 - Shewana3_3107 0.56 +0.3 3,727,851 + Shewana3_3107 0.74 -0.1 3,727,900 - Shewana3_3107 0.78 +0.1 3,727,929 - Shewana3_3107 0.80 +0.3 3,727,931 + Shewana3_3107 0.80 -1.8 3,728,018 + Shewana3_3107 0.86 -0.3 3,728,023 + Shewana3_3107 0.86 -0.0 3,728,029 - Shewana3_3107 0.86 +0.2 3,728,037 + Shewana3_3107 0.87 +0.3 3,728,042 + Shewana3_3107 0.87 -1.1 3,728,137 - +0.7 3,728,196 + +0.1 3,728,379 - Shewana3_3108 0.34 +0.9 3,728,504 + Shewana3_3108 0.69 +0.9 3,728,512 - Shewana3_3108 0.71 +0.6 3,728,557 - Shewana3_3108 0.84 -0.2 3,729,080 - Shewana3_3109 0.39 -1.0 3,729,086 - Shewana3_3109 0.39 +1.3 3,729,212 + Shewana3_3109 0.57 +0.8
Or see this region's nucleotide sequence