Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3103 and Shewana3_3104 are separated by 145 nucleotides Shewana3_3104 and Shewana3_3105 are separated by 165 nucleotides Shewana3_3105 and Shewana3_3106 are separated by 280 nucleotides
Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867
_3103
Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408
_3104
Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070
_3105
Shewana3_3106: Shewana3_3106 - beta alanine--pyruvate transaminase (RefSeq), at 3,725,351 to 3,726,691
_3106
Position (kb)
3723
3724
3725
3726 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3722.644 kb on + strand, within Shewana3_3103 at 3722.662 kb on - strand, within Shewana3_3103 at 3722.747 kb on + strand, within Shewana3_3103 at 3722.786 kb on - strand at 3722.830 kb on + strand at 3722.848 kb on - strand at 3722.949 kb on + strand at 3723.072 kb on + strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.473 kb on + strand at 3723.491 kb on - strand at 3723.772 kb on - strand, within Shewana3_3105 at 3723.854 kb on + strand, within Shewana3_3105 at 3724.173 kb on - strand, within Shewana3_3105 at 3724.240 kb on - strand, within Shewana3_3105 at 3724.255 kb on + strand, within Shewana3_3105 at 3724.273 kb on - strand, within Shewana3_3105 at 3724.424 kb on + strand, within Shewana3_3105 at 3724.424 kb on + strand, within Shewana3_3105 at 3724.514 kb on + strand, within Shewana3_3105 at 3724.599 kb on - strand, within Shewana3_3105 at 3724.871 kb on - strand, within Shewana3_3105 at 3724.871 kb on - strand, within Shewana3_3105 at 3724.997 kb on + strand at 3725.158 kb on + strand at 3725.171 kb on + strand at 3725.251 kb on - strand at 3725.317 kb on - strand at 3725.317 kb on - strand at 3725.371 kb on - strand at 3725.501 kb on + strand, within Shewana3_3106 at 3725.672 kb on - strand, within Shewana3_3106 at 3725.706 kb on - strand, within Shewana3_3106 at 3725.787 kb on + strand, within Shewana3_3106 at 3725.797 kb on + strand, within Shewana3_3106 at 3725.883 kb on + strand, within Shewana3_3106 at 3725.912 kb on - strand, within Shewana3_3106 at 3725.969 kb on + strand, within Shewana3_3106 at 3725.970 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106 at 3725.990 kb on + strand, within Shewana3_3106
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,722,644 + Shewana3_3103 0.74 +0.2 3,722,662 - Shewana3_3103 0.76 +0.4 3,722,747 + Shewana3_3103 0.86 -2.5 3,722,786 - +0.1 3,722,830 + -0.4 3,722,848 - -0.2 3,722,949 + +0.0 3,723,072 + Shewana3_3104 0.15 -1.7 3,723,145 - Shewana3_3104 0.33 -0.3 3,723,145 - Shewana3_3104 0.33 +0.3 3,723,473 + +1.6 3,723,491 - -0.2 3,723,772 - Shewana3_3105 0.13 +0.6 3,723,854 + Shewana3_3105 0.19 -0.8 3,724,173 - Shewana3_3105 0.40 +0.7 3,724,240 - Shewana3_3105 0.44 +1.0 3,724,255 + Shewana3_3105 0.45 -0.5 3,724,273 - Shewana3_3105 0.47 +0.3 3,724,424 + Shewana3_3105 0.57 -0.7 3,724,424 + Shewana3_3105 0.57 -0.5 3,724,514 + Shewana3_3105 0.63 +0.4 3,724,599 - Shewana3_3105 0.68 -0.4 3,724,871 - Shewana3_3105 0.87 -1.6 3,724,871 - Shewana3_3105 0.87 -0.7 3,724,997 + -0.4 3,725,158 + -3.0 3,725,171 + -0.0 3,725,251 - -0.1 3,725,317 - +0.4 3,725,317 - -0.1 3,725,371 - +1.1 3,725,501 + Shewana3_3106 0.11 +0.2 3,725,672 - Shewana3_3106 0.24 +0.3 3,725,706 - Shewana3_3106 0.26 +1.1 3,725,787 + Shewana3_3106 0.33 -0.0 3,725,797 + Shewana3_3106 0.33 +0.3 3,725,883 + Shewana3_3106 0.40 +0.6 3,725,912 - Shewana3_3106 0.42 +0.4 3,725,969 + Shewana3_3106 0.46 +0.4 3,725,970 + Shewana3_3106 0.46 -0.7 3,725,990 + Shewana3_3106 0.48 +0.1 3,725,990 + Shewana3_3106 0.48 -0.5
Or see this region's nucleotide sequence