Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3075

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3074 and Shewana3_3075 overlap by 1 nucleotidesShewana3_3075 and Shewana3_3076 are separated by 174 nucleotides Shewana3_3074: Shewana3_3074 - general secretion pathway protein B (RefSeq), at 3,686,679 to 3,687,779 _3074 Shewana3_3075: Shewana3_3075 - peptidoglycan binding domain-containing protein (RefSeq), at 3,687,779 to 3,689,467 _3075 Shewana3_3076: Shewana3_3076 - metal dependent phosphohydrolase (RefSeq), at 3,689,642 to 3,690,892 _3076 Position (kb) 3687 3688 3689 3690Strain fitness (log2 ratio) -3 -2 -1 0 1at 3687.099 kb on - strand, within Shewana3_3074at 3687.187 kb on - strand, within Shewana3_3074at 3687.316 kb on + strand, within Shewana3_3074at 3687.612 kb on - strand, within Shewana3_3074at 3687.734 kb on - strandat 3687.811 kb on + strandat 3687.867 kb on + strandat 3688.010 kb on - strand, within Shewana3_3075at 3688.291 kb on + strand, within Shewana3_3075at 3688.292 kb on + strand, within Shewana3_3075at 3688.324 kb on + strand, within Shewana3_3075at 3688.492 kb on - strand, within Shewana3_3075at 3688.684 kb on + strand, within Shewana3_3075at 3688.796 kb on + strand, within Shewana3_3075at 3688.828 kb on - strand, within Shewana3_3075at 3688.888 kb on + strand, within Shewana3_3075at 3688.936 kb on + strand, within Shewana3_3075at 3689.042 kb on - strand, within Shewana3_3075at 3689.043 kb on - strand, within Shewana3_3075at 3689.043 kb on - strand, within Shewana3_3075at 3689.363 kb on - strandat 3689.369 kb on + strandat 3689.635 kb on - strandat 3690.426 kb on + strand, within Shewana3_3076

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,687,099 - Shewana3_3074 0.38 -0.0
3,687,187 - Shewana3_3074 0.46 +0.2
3,687,316 + Shewana3_3074 0.58 -1.5
3,687,612 - Shewana3_3074 0.85 -0.3
3,687,734 - +0.2
3,687,811 + -3.0
3,687,867 + -1.8
3,688,010 - Shewana3_3075 0.14 -0.4
3,688,291 + Shewana3_3075 0.30 -0.5
3,688,292 + Shewana3_3075 0.30 -0.2
3,688,324 + Shewana3_3075 0.32 -0.8
3,688,492 - Shewana3_3075 0.42 -1.6
3,688,684 + Shewana3_3075 0.54 -1.0
3,688,796 + Shewana3_3075 0.60 +0.7
3,688,828 - Shewana3_3075 0.62 -0.2
3,688,888 + Shewana3_3075 0.66 -2.6
3,688,936 + Shewana3_3075 0.69 -1.3
3,689,042 - Shewana3_3075 0.75 -1.0
3,689,043 - Shewana3_3075 0.75 +0.3
3,689,043 - Shewana3_3075 0.75 -1.4
3,689,363 - -0.7
3,689,369 + -1.5
3,689,635 - -2.4
3,690,426 + Shewana3_3076 0.63 -1.3

Or see this region's nucleotide sequence