Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3068

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3065 and Shewana3_3066 are separated by 19 nucleotidesShewana3_3066 and Shewana3_3067 are separated by 127 nucleotidesShewana3_3067 and Shewana3_3068 overlap by 8 nucleotidesShewana3_3068 and Shewana3_3069 are separated by 74 nucleotides Shewana3_3065: Shewana3_3065 - hypothetical protein (RefSeq), at 3,678,088 to 3,678,468 _3065 Shewana3_3066: Shewana3_3066 - hypothetical protein (RefSeq), at 3,678,488 to 3,678,943 _3066 Shewana3_3067: Shewana3_3067 - iron-sulfur cluster insertion protein ErpA (RefSeq), at 3,679,071 to 3,679,421 _3067 Shewana3_3068: Shewana3_3068 - hypothetical protein (RefSeq), at 3,679,414 to 3,680,220 _3068 Shewana3_3069: Shewana3_3069 - Cl- channel, voltage-gated family protein (RefSeq), at 3,680,295 to 3,682,019 _3069 Position (kb) 3679 3680 3681Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3678.463 kb on + strandat 3678.538 kb on - strand, within Shewana3_3066at 3678.583 kb on + strand, within Shewana3_3066at 3678.679 kb on + strand, within Shewana3_3066at 3678.741 kb on - strand, within Shewana3_3066at 3678.754 kb on - strand, within Shewana3_3066at 3678.907 kb on + strandat 3679.532 kb on - strand, within Shewana3_3068at 3679.551 kb on + strand, within Shewana3_3068at 3679.620 kb on + strand, within Shewana3_3068at 3679.626 kb on - strand, within Shewana3_3068at 3679.732 kb on - strand, within Shewana3_3068at 3679.747 kb on + strand, within Shewana3_3068at 3679.755 kb on - strand, within Shewana3_3068at 3679.883 kb on - strand, within Shewana3_3068at 3680.102 kb on - strand, within Shewana3_3068at 3680.106 kb on + strand, within Shewana3_3068at 3680.232 kb on - strandat 3680.278 kb on - strandat 3680.278 kb on - strandat 3680.285 kb on + strandat 3680.285 kb on + strandat 3680.293 kb on - strandat 3680.388 kb on + strandat 3680.496 kb on - strand, within Shewana3_3069at 3680.636 kb on - strand, within Shewana3_3069at 3680.878 kb on - strand, within Shewana3_3069at 3680.930 kb on - strand, within Shewana3_3069at 3680.935 kb on + strand, within Shewana3_3069at 3681.061 kb on + strand, within Shewana3_3069at 3681.061 kb on + strand, within Shewana3_3069at 3681.066 kb on + strand, within Shewana3_3069at 3681.069 kb on - strand, within Shewana3_3069at 3681.112 kb on - strand, within Shewana3_3069at 3681.131 kb on - strand, within Shewana3_3069at 3681.191 kb on - strand, within Shewana3_3069

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,678,463 + -0.4
3,678,538 - Shewana3_3066 0.11 -1.9
3,678,583 + Shewana3_3066 0.21 +0.4
3,678,679 + Shewana3_3066 0.42 +1.3
3,678,741 - Shewana3_3066 0.55 -1.3
3,678,754 - Shewana3_3066 0.58 -2.3
3,678,907 + +0.7
3,679,532 - Shewana3_3068 0.15 +0.6
3,679,551 + Shewana3_3068 0.17 -2.2
3,679,620 + Shewana3_3068 0.26 +0.1
3,679,626 - Shewana3_3068 0.26 +1.4
3,679,732 - Shewana3_3068 0.39 +0.4
3,679,747 + Shewana3_3068 0.41 +2.1
3,679,755 - Shewana3_3068 0.42 +0.8
3,679,883 - Shewana3_3068 0.58 +0.3
3,680,102 - Shewana3_3068 0.85 +1.4
3,680,106 + Shewana3_3068 0.86 -2.8
3,680,232 - -0.0
3,680,278 - -0.1
3,680,278 - -0.1
3,680,285 + -0.3
3,680,285 + -1.7
3,680,293 - -0.1
3,680,388 + +0.5
3,680,496 - Shewana3_3069 0.12 -1.0
3,680,636 - Shewana3_3069 0.20 -0.2
3,680,878 - Shewana3_3069 0.34 -0.1
3,680,930 - Shewana3_3069 0.37 -0.8
3,680,935 + Shewana3_3069 0.37 +0.2
3,681,061 + Shewana3_3069 0.44 -1.4
3,681,061 + Shewana3_3069 0.44 -0.5
3,681,066 + Shewana3_3069 0.45 -0.5
3,681,069 - Shewana3_3069 0.45 -2.0
3,681,112 - Shewana3_3069 0.47 +0.6
3,681,131 - Shewana3_3069 0.48 +0.1
3,681,191 - Shewana3_3069 0.52 +1.4

Or see this region's nucleotide sequence