Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3062 and Shewana3_3063 are separated by 478 nucleotides Shewana3_3063 and Shewana3_3064 are separated by 686 nucleotides
Shewana3_3062: Shewana3_3062 - glutamyl peptidase (RefSeq), at 3,670,640 to 3,673,048
_3062
Shewana3_3063: Shewana3_3063 - phosphatidylglycerophosphatase (RefSeq), at 3,673,527 to 3,676,550
_3063
Shewana3_3064: Shewana3_3064 - aquaporin Z (RefSeq), at 3,677,237 to 3,677,932
_3064
Position (kb)
3673
3674
3675
3676
3677 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3672.530 kb on - strand, within Shewana3_3062 at 3672.586 kb on - strand, within Shewana3_3062 at 3672.721 kb on - strand, within Shewana3_3062 at 3672.949 kb on - strand at 3673.190 kb on - strand at 3673.223 kb on + strand at 3673.288 kb on - strand at 3673.310 kb on - strand at 3673.336 kb on - strand at 3673.351 kb on - strand at 3673.355 kb on + strand at 3673.363 kb on - strand at 3673.376 kb on + strand at 3673.378 kb on + strand at 3673.546 kb on - strand at 3673.551 kb on - strand at 3673.593 kb on - strand at 3673.598 kb on - strand at 3673.677 kb on - strand at 3673.708 kb on + strand at 3673.708 kb on + strand at 3673.716 kb on - strand at 3673.716 kb on - strand at 3673.788 kb on + strand at 3673.830 kb on - strand, within Shewana3_3063 at 3673.873 kb on + strand, within Shewana3_3063 at 3674.225 kb on + strand, within Shewana3_3063 at 3674.354 kb on - strand, within Shewana3_3063 at 3674.498 kb on + strand, within Shewana3_3063 at 3674.549 kb on - strand, within Shewana3_3063 at 3674.714 kb on + strand, within Shewana3_3063 at 3674.964 kb on - strand, within Shewana3_3063 at 3675.060 kb on + strand, within Shewana3_3063 at 3675.205 kb on - strand, within Shewana3_3063 at 3675.324 kb on + strand, within Shewana3_3063 at 3675.405 kb on - strand, within Shewana3_3063 at 3675.455 kb on - strand, within Shewana3_3063 at 3675.568 kb on + strand, within Shewana3_3063 at 3675.583 kb on - strand, within Shewana3_3063 at 3675.987 kb on - strand, within Shewana3_3063 at 3675.992 kb on + strand, within Shewana3_3063 at 3676.030 kb on - strand, within Shewana3_3063 at 3676.133 kb on - strand, within Shewana3_3063 at 3676.469 kb on - strand at 3676.471 kb on - strand at 3677.002 kb on - strand at 3677.065 kb on + strand at 3677.073 kb on - strand at 3677.312 kb on + strand, within Shewana3_3064 at 3677.531 kb on + strand, within Shewana3_3064 at 3677.531 kb on + strand, within Shewana3_3064 at 3677.531 kb on + strand, within Shewana3_3064
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,672,530 - Shewana3_3062 0.78 -1.0 3,672,586 - Shewana3_3062 0.81 -0.9 3,672,721 - Shewana3_3062 0.86 -3.2 3,672,949 - -2.2 3,673,190 - +0.2 3,673,223 + -0.8 3,673,288 - +0.6 3,673,310 - -0.7 3,673,336 - -0.8 3,673,351 - -1.7 3,673,355 + -2.0 3,673,363 - -0.5 3,673,376 + -0.3 3,673,378 + -2.1 3,673,546 - -0.4 3,673,551 - +0.7 3,673,593 - +0.6 3,673,598 - +0.9 3,673,677 - -0.7 3,673,708 + +0.5 3,673,708 + -0.7 3,673,716 - +1.0 3,673,716 - +0.8 3,673,788 + -2.0 3,673,830 - Shewana3_3063 0.10 +0.6 3,673,873 + Shewana3_3063 0.11 -1.4 3,674,225 + Shewana3_3063 0.23 -0.2 3,674,354 - Shewana3_3063 0.27 -0.9 3,674,498 + Shewana3_3063 0.32 -3.3 3,674,549 - Shewana3_3063 0.34 +0.0 3,674,714 + Shewana3_3063 0.39 +0.1 3,674,964 - Shewana3_3063 0.48 -1.1 3,675,060 + Shewana3_3063 0.51 +0.1 3,675,205 - Shewana3_3063 0.55 +0.5 3,675,324 + Shewana3_3063 0.59 -0.2 3,675,405 - Shewana3_3063 0.62 +0.5 3,675,455 - Shewana3_3063 0.64 -1.7 3,675,568 + Shewana3_3063 0.67 -0.4 3,675,583 - Shewana3_3063 0.68 -0.4 3,675,987 - Shewana3_3063 0.81 -0.2 3,675,992 + Shewana3_3063 0.82 -1.2 3,676,030 - Shewana3_3063 0.83 -1.2 3,676,133 - Shewana3_3063 0.86 +0.1 3,676,469 - -0.3 3,676,471 - -1.1 3,677,002 - -1.0 3,677,065 + -0.3 3,677,073 - -0.5 3,677,312 + Shewana3_3064 0.11 +0.5 3,677,531 + Shewana3_3064 0.42 +0.5 3,677,531 + Shewana3_3064 0.42 +0.1 3,677,531 + Shewana3_3064 0.42 +0.2
Or see this region's nucleotide sequence