Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3059 and anmK are separated by 20 nucleotides anmK and Shewana3_3061 are separated by 9 nucleotides
Shewana3_3059: Shewana3_3059 - peptidase M23B (RefSeq), at 3,665,640 to 3,667,040
_3059
Shewana3_3060: anmK - anhydro-N-acetylmuramic acid kinase (RefSeq), at 3,667,061 to 3,668,170
anmK
Shewana3_3061: Shewana3_3061 - transcriptional regulator domain-containing protein (RefSeq), at 3,668,180 to 3,670,330
_3061
Position (kb)
3667
3668
3669 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3666.176 kb on - strand, within Shewana3_3059 at 3666.254 kb on - strand, within Shewana3_3059 at 3666.324 kb on - strand, within Shewana3_3059 at 3666.326 kb on + strand, within Shewana3_3059 at 3666.378 kb on + strand, within Shewana3_3059 at 3666.526 kb on + strand, within Shewana3_3059 at 3666.608 kb on - strand, within Shewana3_3059 at 3666.608 kb on - strand, within Shewana3_3059 at 3666.610 kb on - strand, within Shewana3_3059 at 3666.631 kb on - strand, within Shewana3_3059 at 3666.819 kb on - strand, within Shewana3_3059 at 3666.870 kb on + strand, within Shewana3_3059 at 3666.929 kb on + strand at 3666.929 kb on + strand at 3667.000 kb on + strand at 3667.209 kb on + strand, within anmK at 3667.209 kb on + strand, within anmK at 3667.506 kb on - strand, within anmK at 3667.517 kb on - strand, within anmK at 3667.617 kb on - strand, within anmK at 3667.820 kb on - strand, within anmK at 3668.061 kb on + strand at 3668.131 kb on + strand at 3668.163 kb on - strand at 3668.163 kb on - strand at 3668.307 kb on + strand at 3668.460 kb on + strand, within Shewana3_3061 at 3668.460 kb on - strand, within Shewana3_3061 at 3668.468 kb on - strand, within Shewana3_3061 at 3668.640 kb on - strand, within Shewana3_3061 at 3668.812 kb on + strand, within Shewana3_3061 at 3669.071 kb on + strand, within Shewana3_3061
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,666,176 - Shewana3_3059 0.38 -1.2 3,666,254 - Shewana3_3059 0.44 -1.0 3,666,324 - Shewana3_3059 0.49 -1.9 3,666,326 + Shewana3_3059 0.49 +0.9 3,666,378 + Shewana3_3059 0.53 +0.1 3,666,526 + Shewana3_3059 0.63 -0.4 3,666,608 - Shewana3_3059 0.69 -0.8 3,666,608 - Shewana3_3059 0.69 -1.9 3,666,610 - Shewana3_3059 0.69 -0.1 3,666,631 - Shewana3_3059 0.71 +0.1 3,666,819 - Shewana3_3059 0.84 +0.5 3,666,870 + Shewana3_3059 0.88 -0.8 3,666,929 + +0.3 3,666,929 + +0.1 3,667,000 + +0.7 3,667,209 + anmK Shewana3_3060 0.13 -0.9 3,667,209 + anmK Shewana3_3060 0.13 +0.1 3,667,506 - anmK Shewana3_3060 0.40 -0.7 3,667,517 - anmK Shewana3_3060 0.41 -0.7 3,667,617 - anmK Shewana3_3060 0.50 -1.1 3,667,820 - anmK Shewana3_3060 0.68 -1.1 3,668,061 + -0.7 3,668,131 + -0.0 3,668,163 - -0.6 3,668,163 - -1.2 3,668,307 + -3.3 3,668,460 + Shewana3_3061 0.13 +0.7 3,668,460 - Shewana3_3061 0.13 +0.8 3,668,468 - Shewana3_3061 0.13 +0.3 3,668,640 - Shewana3_3061 0.21 -1.3 3,668,812 + Shewana3_3061 0.29 -1.0 3,669,071 + Shewana3_3061 0.41 -0.1
Or see this region's nucleotide sequence