Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3033 and Shewana3_3034 are separated by 90 nucleotides Shewana3_3034 and Shewana3_3035 overlap by 20 nucleotides Shewana3_3035 and nhaR are separated by 91 nucleotides nhaR and Shewana3_3037 are separated by 95 nucleotides Shewana3_3037 and Shewana3_3038 are separated by 2 nucleotides
Shewana3_3033: Shewana3_3033 - L-aspartate oxidase (RefSeq), at 3,638,013 to 3,639,626
_3033
Shewana3_3034: Shewana3_3034 - hypothetical protein (RefSeq), at 3,639,717 to 3,640,157
_3034
Shewana3_3035: Shewana3_3035 - hypothetical protein (RefSeq), at 3,640,138 to 3,640,377
_3035
Shewana3_3036: nhaR - transcriptional activator NhaR (RefSeq), at 3,640,469 to 3,641,377
nhaR
Shewana3_3037: Shewana3_3037 - hypothetical protein (RefSeq), at 3,641,473 to 3,641,859
_3037
Shewana3_3038: Shewana3_3038 - Na+/H+ antiporter NhaA (RefSeq), at 3,641,862 to 3,643,031
_3038
Position (kb)
3640
3641
3642 Strain fitness (log2 ratio)
-2
-1
0
1 at 3639.663 kb on - strand at 3639.670 kb on + strand at 3639.861 kb on + strand, within Shewana3_3034 at 3640.198 kb on + strand, within Shewana3_3035 at 3640.206 kb on - strand, within Shewana3_3035 at 3640.336 kb on - strand, within Shewana3_3035 at 3640.424 kb on + strand at 3640.865 kb on + strand, within nhaR at 3641.137 kb on + strand, within nhaR at 3641.276 kb on + strand, within nhaR at 3641.290 kb on + strand at 3641.298 kb on - strand at 3641.305 kb on - strand at 3641.411 kb on + strand at 3641.421 kb on + strand at 3641.428 kb on + strand at 3641.647 kb on + strand, within Shewana3_3037 at 3641.665 kb on - strand, within Shewana3_3037 at 3641.665 kb on - strand, within Shewana3_3037 at 3641.929 kb on - strand at 3641.961 kb on + strand at 3642.180 kb on - strand, within Shewana3_3038 at 3642.264 kb on + strand, within Shewana3_3038 at 3642.369 kb on + strand, within Shewana3_3038 at 3642.375 kb on - strand, within Shewana3_3038
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,639,663 - -0.7 3,639,670 + -0.4 3,639,861 + Shewana3_3034 0.33 -0.5 3,640,198 + Shewana3_3035 0.25 -0.9 3,640,206 - Shewana3_3035 0.28 +0.7 3,640,336 - Shewana3_3035 0.82 +0.3 3,640,424 + -2.0 3,640,865 + nhaR Shewana3_3036 0.44 +0.1 3,641,137 + nhaR Shewana3_3036 0.73 +0.4 3,641,276 + nhaR Shewana3_3036 0.89 +0.2 3,641,290 + +0.1 3,641,298 - +0.4 3,641,305 - -0.2 3,641,411 + -0.8 3,641,421 + +1.0 3,641,428 + -0.0 3,641,647 + Shewana3_3037 0.45 +1.1 3,641,665 - Shewana3_3037 0.50 -0.3 3,641,665 - Shewana3_3037 0.50 +0.2 3,641,929 - +0.6 3,641,961 + +1.1 3,642,180 - Shewana3_3038 0.27 -0.1 3,642,264 + Shewana3_3038 0.34 +0.1 3,642,369 + Shewana3_3038 0.43 -1.2 3,642,375 - Shewana3_3038 0.44 -0.3
Or see this region's nucleotide sequence