Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2988 and Shewana3_2989 are separated by 80 nucleotides Shewana3_2989 and Shewana3_2990 are separated by 312 nucleotides
Shewana3_2988: Shewana3_2988 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,593,167 to 3,594,468
_2988
Shewana3_2989: Shewana3_2989 - hypothetical protein (RefSeq), at 3,594,549 to 3,595,844
_2989
Shewana3_2990: Shewana3_2990 - hypothetical protein (RefSeq), at 3,596,157 to 3,597,044
_2990
Position (kb)
3594
3595
3596 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3593.652 kb on - strand, within Shewana3_2988 at 3593.897 kb on + strand, within Shewana3_2988 at 3593.935 kb on + strand, within Shewana3_2988 at 3594.428 kb on + strand at 3594.447 kb on - strand at 3594.518 kb on + strand at 3594.708 kb on - strand, within Shewana3_2989 at 3594.730 kb on - strand, within Shewana3_2989 at 3595.063 kb on - strand, within Shewana3_2989 at 3595.105 kb on - strand, within Shewana3_2989 at 3595.150 kb on - strand, within Shewana3_2989 at 3595.150 kb on - strand, within Shewana3_2989 at 3595.195 kb on - strand, within Shewana3_2989 at 3595.233 kb on - strand, within Shewana3_2989 at 3595.249 kb on + strand, within Shewana3_2989 at 3595.415 kb on - strand, within Shewana3_2989 at 3595.475 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.591 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3595.644 kb on - strand, within Shewana3_2989 at 3596.060 kb on + strand at 3596.073 kb on + strand at 3596.163 kb on - strand at 3596.299 kb on - strand, within Shewana3_2990 at 3596.454 kb on - strand, within Shewana3_2990 at 3596.571 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990 at 3596.837 kb on + strand, within Shewana3_2990
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,593,652 - Shewana3_2988 0.37 -0.7 3,593,897 + Shewana3_2988 0.56 -0.5 3,593,935 + Shewana3_2988 0.59 +0.6 3,594,428 + +0.8 3,594,447 - -0.2 3,594,518 + +1.1 3,594,708 - Shewana3_2989 0.12 +1.0 3,594,730 - Shewana3_2989 0.14 +0.9 3,595,063 - Shewana3_2989 0.40 -0.0 3,595,105 - Shewana3_2989 0.43 +0.9 3,595,150 - Shewana3_2989 0.46 +0.1 3,595,150 - Shewana3_2989 0.46 +0.7 3,595,195 - Shewana3_2989 0.50 +1.0 3,595,233 - Shewana3_2989 0.53 +0.2 3,595,249 + Shewana3_2989 0.54 +0.2 3,595,415 - Shewana3_2989 0.67 -2.1 3,595,475 - Shewana3_2989 0.71 +0.1 3,595,591 - Shewana3_2989 0.80 +0.9 3,595,591 - Shewana3_2989 0.80 +0.7 3,595,644 - Shewana3_2989 0.84 +1.2 3,595,644 - Shewana3_2989 0.84 +1.4 3,596,060 + -0.2 3,596,073 + +1.1 3,596,163 - -0.2 3,596,299 - Shewana3_2990 0.16 -2.3 3,596,454 - Shewana3_2990 0.33 -2.4 3,596,571 + Shewana3_2990 0.47 +2.1 3,596,837 + Shewana3_2990 0.77 +0.8 3,596,837 + Shewana3_2990 0.77 +0.5 3,596,837 + Shewana3_2990 0.77 +0.1
Or see this region's nucleotide sequence