Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2984 and Shewana3_2985 are separated by 688 nucleotides Shewana3_2985 and Shewana3_2986 are separated by 361 nucleotides
Shewana3_2984: Shewana3_2984 - glycosyl hydrolase family chitinase (RefSeq), at 3,584,514 to 3,587,120
_2984
Shewana3_2985: Shewana3_2985 - ROK family protein (RefSeq), at 3,587,809 to 3,588,600
_2985
Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776
_2986
Position (kb)
3587
3588
3589 Strain fitness (log2 ratio)
-2
-1
0
1 at 3586.875 kb on - strand at 3586.907 kb on - strand at 3586.908 kb on + strand at 3586.956 kb on + strand at 3587.077 kb on + strand at 3587.194 kb on - strand at 3587.262 kb on + strand at 3587.423 kb on - strand at 3587.642 kb on - strand at 3587.682 kb on - strand at 3588.013 kb on - strand, within Shewana3_2985 at 3588.028 kb on + strand, within Shewana3_2985 at 3588.239 kb on - strand, within Shewana3_2985 at 3588.249 kb on - strand, within Shewana3_2985 at 3588.353 kb on - strand, within Shewana3_2985 at 3588.510 kb on - strand, within Shewana3_2985 at 3588.786 kb on - strand at 3588.863 kb on - strand at 3589.031 kb on + strand at 3589.116 kb on - strand at 3589.287 kb on + strand, within Shewana3_2986 at 3589.338 kb on + strand, within Shewana3_2986
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,586,875 - +0.9 3,586,907 - -0.4 3,586,908 + -1.3 3,586,956 + -1.8 3,587,077 + +0.7 3,587,194 - -0.3 3,587,262 + -0.8 3,587,423 - -0.4 3,587,642 - -0.9 3,587,682 - +1.2 3,588,013 - Shewana3_2985 0.26 +1.4 3,588,028 + Shewana3_2985 0.28 +1.1 3,588,239 - Shewana3_2985 0.54 +0.3 3,588,249 - Shewana3_2985 0.56 +0.8 3,588,353 - Shewana3_2985 0.69 +0.7 3,588,510 - Shewana3_2985 0.89 +0.4 3,588,786 - -0.4 3,588,863 - +0.1 3,589,031 + -0.5 3,589,116 - -0.2 3,589,287 + Shewana3_2986 0.18 +0.3 3,589,338 + Shewana3_2986 0.21 +0.5
Or see this region's nucleotide sequence