Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2972 and Shewana3_2973 are separated by 41 nucleotides Shewana3_2973 and Shewana3_2974 are separated by 77 nucleotides
Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916
_2972
Shewana3_2973: Shewana3_2973 - YheO domain-containing protein (RefSeq), at 3,573,958 to 3,574,638
_2973
Shewana3_2974: Shewana3_2974 - hypothetical protein (RefSeq), at 3,574,716 to 3,576,446
_2974
Position (kb)
3573
3574
3575 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3573.281 kb on + strand, within Shewana3_2972 at 3573.402 kb on + strand, within Shewana3_2972 at 3573.971 kb on + strand at 3574.070 kb on + strand, within Shewana3_2973 at 3574.070 kb on + strand, within Shewana3_2973 at 3574.086 kb on + strand, within Shewana3_2973 at 3574.661 kb on + strand at 3574.661 kb on + strand at 3574.760 kb on - strand at 3574.824 kb on + strand at 3574.911 kb on + strand, within Shewana3_2974 at 3574.919 kb on - strand, within Shewana3_2974 at 3575.022 kb on + strand, within Shewana3_2974 at 3575.347 kb on + strand, within Shewana3_2974 at 3575.473 kb on + strand, within Shewana3_2974 at 3575.473 kb on + strand, within Shewana3_2974 at 3575.481 kb on - strand, within Shewana3_2974 at 3575.481 kb on - strand, within Shewana3_2974 at 3575.481 kb on - strand, within Shewana3_2974 at 3575.527 kb on + strand, within Shewana3_2974 at 3575.567 kb on - strand, within Shewana3_2974 at 3575.576 kb on + strand, within Shewana3_2974 at 3575.618 kb on + strand, within Shewana3_2974
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,573,281 + Shewana3_2972 0.50 +1.2 3,573,402 + Shewana3_2972 0.60 +0.5 3,573,971 + +1.1 3,574,070 + Shewana3_2973 0.16 +0.9 3,574,070 + Shewana3_2973 0.16 +0.6 3,574,086 + Shewana3_2973 0.19 +1.2 3,574,661 + -0.1 3,574,661 + -1.0 3,574,760 - +0.9 3,574,824 + -1.4 3,574,911 + Shewana3_2974 0.11 -0.7 3,574,919 - Shewana3_2974 0.12 -0.6 3,575,022 + Shewana3_2974 0.18 +1.0 3,575,347 + Shewana3_2974 0.36 +2.1 3,575,473 + Shewana3_2974 0.44 -1.8 3,575,473 + Shewana3_2974 0.44 -2.0 3,575,481 - Shewana3_2974 0.44 +0.3 3,575,481 - Shewana3_2974 0.44 +0.9 3,575,481 - Shewana3_2974 0.44 +0.4 3,575,527 + Shewana3_2974 0.47 +0.5 3,575,567 - Shewana3_2974 0.49 +0.3 3,575,576 + Shewana3_2974 0.50 +0.1 3,575,618 + Shewana3_2974 0.52 -1.2
Or see this region's nucleotide sequence