Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2964

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,561,396	-	hsdR	Shewana3_2963	0.79	-1.8
3,561,458	-	hsdR	Shewana3_2963	0.80	-2.7
3,561,478	-	hsdR	Shewana3_2963	0.81	-0.6
3,561,538	+	hsdR	Shewana3_2963	0.83	-0.6
3,561,607	-	hsdR	Shewana3_2963	0.85	+0.5
3,561,800	+				-0.1
3,561,821	+				+1.1
3,561,821	+				-0.2
3,561,821	+				-1.8
3,561,953	-				-2.1
3,561,989	-				-0.1
3,561,991	-				-0.6
3,562,009	-				+1.4
3,562,012	-				-0.7
3,562,018	-				-2.0
3,562,219	+				-0.2
3,562,260	-				-1.3
3,562,417	-				-2.1
3,562,440	+				-2.4
3,562,460	+				-1.7
3,562,462	+				-0.2
3,562,512	+		Shewana3_2964	0.13	-0.8
3,562,512	+		Shewana3_2964	0.13	+0.1
3,562,520	-		Shewana3_2964	0.14	-2.7
3,562,639	-		Shewana3_2964	0.26	-1.3
3,562,655	+		Shewana3_2964	0.28	-1.4
3,562,663	-		Shewana3_2964	0.29	-0.8
3,562,664	+		Shewana3_2964	0.29	-1.8
3,562,677	+		Shewana3_2964	0.30	-0.8
3,562,679	+		Shewana3_2964	0.31	-2.3
3,562,715	+		Shewana3_2964	0.34	-0.8
3,562,715	+		Shewana3_2964	0.34	-1.3
3,562,723	-		Shewana3_2964	0.35	-0.2
3,562,723	-		Shewana3_2964	0.35	+0.1
3,562,734	+		Shewana3_2964	0.36	-0.7
3,562,770	-		Shewana3_2964	0.40	-0.2
3,562,780	-		Shewana3_2964	0.41	+0.2
3,562,849	+		Shewana3_2964	0.48	+1.1
3,562,896	+		Shewana3_2964	0.53	-1.4
3,562,902	-		Shewana3_2964	0.54	+0.5
3,562,904	-		Shewana3_2964	0.54	-1.9
3,562,905	+		Shewana3_2964	0.54	-3.3
3,562,905	+		Shewana3_2964	0.54	-0.9
3,562,909	+		Shewana3_2964	0.55	-0.5
3,562,910	+		Shewana3_2964	0.55	-0.7
3,562,913	-		Shewana3_2964	0.55	-1.3
3,562,921	+		Shewana3_2964	0.56	-1.1
3,562,921	+		Shewana3_2964	0.56	-0.5
3,562,923	-		Shewana3_2964	0.56	-2.3
3,562,929	-		Shewana3_2964	0.57	-0.2
3,562,931	+		Shewana3_2964	0.57	-0.6
3,563,016	+		Shewana3_2964	0.66	-1.9
3,563,016	+		Shewana3_2964	0.66	+0.3
3,563,016	+		Shewana3_2964	0.66	-0.9
3,563,016	+		Shewana3_2964	0.66	-1.3
3,563,022	+		Shewana3_2964	0.67	-0.7
3,563,024	-		Shewana3_2964	0.67	-0.5
3,563,024	-		Shewana3_2964	0.67	-2.3
3,563,024	-		Shewana3_2964	0.67	-1.4
3,563,024	-		Shewana3_2964	0.67	-0.5
3,563,024	-		Shewana3_2964	0.67	-2.3
3,563,024	-		Shewana3_2964	0.67	+0.5
3,563,060	+		Shewana3_2964	0.71	+1.5
3,563,065	+		Shewana3_2964	0.71	-1.1
3,563,075	+		Shewana3_2964	0.72	-0.4
3,563,127	-		Shewana3_2964	0.78	-2.5
3,563,246	+				+0.2
3,563,251	+				-0.7
3,563,288	+				-1.1
3,563,295	+				-0.7
3,563,295	+				+0.9
3,563,295	+				-0.4
3,563,295	+				-0.1
3,563,295	+				-0.8
3,563,295	+				-0.7
3,563,295	+				+0.5
3,563,303	-				-0.5
3,563,303	-				+2.1
3,563,303	-				-0.1
3,563,303	-				-0.7
3,563,303	-				+0.5
3,563,325	-				+0.7
3,563,371	-				-2.1
3,563,371	-				-1.1
3,563,394	+				+0.4
3,563,525	-				+1.3
3,563,559	+				-2.2
3,563,569	+				-0.2
3,563,577	-				-1.2
3,563,593	+				-0.4
3,563,594	-				+0.4
3,563,601	+				-1.5
3,563,609	-				-0.2
3,563,609	-				+0.9
3,563,623	+				-2.2
3,563,819	+				-2.5
3,563,827	-				-0.2
3,563,827	-				-1.5
3,563,827	-				-1.2
3,563,865	-				-0.3
3,563,908	-				-0.2
3,563,912	+				+0.4
3,563,955	+				+0.5
3,563,955	+				-0.1
3,563,963	-				+0.5
3,563,963	-				+0.7
3,563,977	-				+0.5
3,564,023	-				+0.3
3,564,088	-				-0.3
3,564,211	-		Shewana3_2965	0.13	-0.1
3,564,272	+		Shewana3_2965	0.17	-3.4