Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2955 and Shewana3_2956 are separated by 270 nucleotides Shewana3_2956 and Shewana3_2957 are separated by 7 nucleotides Shewana3_2957 and Shewana3_2958 are separated by 44 nucleotides
Shewana3_2955: Shewana3_2955 - hypothetical protein (RefSeq), at 3,549,000 to 3,549,626
_2955
Shewana3_2956: Shewana3_2956 - hypothetical protein (RefSeq), at 3,549,897 to 3,550,760
_2956
Shewana3_2957: Shewana3_2957 - HNH endonuclease (RefSeq), at 3,550,768 to 3,551,529
_2957
Shewana3_2958: Shewana3_2958 - hypothetical protein (RefSeq), at 3,551,574 to 3,552,383
_2958
Position (kb)
3549
3550
3551 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3549.054 kb on + strand at 3549.057 kb on - strand at 3549.134 kb on + strand, within Shewana3_2955 at 3549.195 kb on - strand, within Shewana3_2955 at 3549.466 kb on + strand, within Shewana3_2955 at 3549.466 kb on + strand, within Shewana3_2955 at 3549.511 kb on + strand, within Shewana3_2955 at 3549.519 kb on - strand, within Shewana3_2955 at 3549.587 kb on - strand at 3549.739 kb on + strand at 3549.852 kb on - strand at 3549.852 kb on - strand at 3549.867 kb on - strand at 3549.873 kb on - strand at 3550.035 kb on - strand, within Shewana3_2956 at 3550.179 kb on + strand, within Shewana3_2956 at 3550.192 kb on + strand, within Shewana3_2956 at 3550.206 kb on + strand, within Shewana3_2956 at 3550.267 kb on + strand, within Shewana3_2956 at 3550.361 kb on - strand, within Shewana3_2956 at 3550.385 kb on + strand, within Shewana3_2956 at 3550.589 kb on + strand, within Shewana3_2956 at 3550.590 kb on + strand, within Shewana3_2956 at 3550.672 kb on + strand, within Shewana3_2956 at 3550.713 kb on - strand at 3551.018 kb on + strand, within Shewana3_2957 at 3551.389 kb on - strand, within Shewana3_2957 at 3551.482 kb on - strand at 3551.519 kb on - strand at 3551.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,549,054 + +0.5 3,549,057 - -0.6 3,549,134 + Shewana3_2955 0.21 -1.9 3,549,195 - Shewana3_2955 0.31 +0.1 3,549,466 + Shewana3_2955 0.74 -0.5 3,549,466 + Shewana3_2955 0.74 +0.1 3,549,511 + Shewana3_2955 0.81 -1.8 3,549,519 - Shewana3_2955 0.83 +0.5 3,549,587 - +0.0 3,549,739 + -0.5 3,549,852 - -0.8 3,549,852 - +0.5 3,549,867 - -0.5 3,549,873 - +0.3 3,550,035 - Shewana3_2956 0.16 -0.5 3,550,179 + Shewana3_2956 0.33 -0.9 3,550,192 + Shewana3_2956 0.34 +0.1 3,550,206 + Shewana3_2956 0.36 -0.5 3,550,267 + Shewana3_2956 0.43 -1.8 3,550,361 - Shewana3_2956 0.54 -1.1 3,550,385 + Shewana3_2956 0.56 -1.6 3,550,589 + Shewana3_2956 0.80 +1.5 3,550,590 + Shewana3_2956 0.80 -1.8 3,550,672 + Shewana3_2956 0.90 -0.9 3,550,713 - +1.9 3,551,018 + Shewana3_2957 0.33 +2.1 3,551,389 - Shewana3_2957 0.81 +1.1 3,551,482 - -0.3 3,551,519 - -2.3 3,551,519 - -0.2
Or see this region's nucleotide sequence