Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2956

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2955 and Shewana3_2956 are separated by 270 nucleotidesShewana3_2956 and Shewana3_2957 are separated by 7 nucleotidesShewana3_2957 and Shewana3_2958 are separated by 44 nucleotides Shewana3_2955: Shewana3_2955 - hypothetical protein (RefSeq), at 3,549,000 to 3,549,626 _2955 Shewana3_2956: Shewana3_2956 - hypothetical protein (RefSeq), at 3,549,897 to 3,550,760 _2956 Shewana3_2957: Shewana3_2957 - HNH endonuclease (RefSeq), at 3,550,768 to 3,551,529 _2957 Shewana3_2958: Shewana3_2958 - hypothetical protein (RefSeq), at 3,551,574 to 3,552,383 _2958 Position (kb) 3549 3550 3551Strain fitness (log2 ratio) -2 -1 0 1 2at 3549.054 kb on + strandat 3549.057 kb on - strandat 3549.134 kb on + strand, within Shewana3_2955at 3549.195 kb on - strand, within Shewana3_2955at 3549.466 kb on + strand, within Shewana3_2955at 3549.466 kb on + strand, within Shewana3_2955at 3549.511 kb on + strand, within Shewana3_2955at 3549.519 kb on - strand, within Shewana3_2955at 3549.587 kb on - strandat 3549.739 kb on + strandat 3549.852 kb on - strandat 3549.852 kb on - strandat 3549.867 kb on - strandat 3549.873 kb on - strandat 3550.035 kb on - strand, within Shewana3_2956at 3550.179 kb on + strand, within Shewana3_2956at 3550.192 kb on + strand, within Shewana3_2956at 3550.206 kb on + strand, within Shewana3_2956at 3550.267 kb on + strand, within Shewana3_2956at 3550.361 kb on - strand, within Shewana3_2956at 3550.385 kb on + strand, within Shewana3_2956at 3550.589 kb on + strand, within Shewana3_2956at 3550.590 kb on + strand, within Shewana3_2956at 3550.672 kb on + strand, within Shewana3_2956at 3550.713 kb on - strandat 3551.018 kb on + strand, within Shewana3_2957at 3551.389 kb on - strand, within Shewana3_2957at 3551.482 kb on - strandat 3551.519 kb on - strandat 3551.519 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,549,054 + +0.5
3,549,057 - -0.6
3,549,134 + Shewana3_2955 0.21 -1.9
3,549,195 - Shewana3_2955 0.31 +0.1
3,549,466 + Shewana3_2955 0.74 -0.5
3,549,466 + Shewana3_2955 0.74 +0.1
3,549,511 + Shewana3_2955 0.81 -1.8
3,549,519 - Shewana3_2955 0.83 +0.5
3,549,587 - +0.0
3,549,739 + -0.5
3,549,852 - -0.8
3,549,852 - +0.5
3,549,867 - -0.5
3,549,873 - +0.3
3,550,035 - Shewana3_2956 0.16 -0.5
3,550,179 + Shewana3_2956 0.33 -0.9
3,550,192 + Shewana3_2956 0.34 +0.1
3,550,206 + Shewana3_2956 0.36 -0.5
3,550,267 + Shewana3_2956 0.43 -1.8
3,550,361 - Shewana3_2956 0.54 -1.1
3,550,385 + Shewana3_2956 0.56 -1.6
3,550,589 + Shewana3_2956 0.80 +1.5
3,550,590 + Shewana3_2956 0.80 -1.8
3,550,672 + Shewana3_2956 0.90 -0.9
3,550,713 - +1.9
3,551,018 + Shewana3_2957 0.33 +2.1
3,551,389 - Shewana3_2957 0.81 +1.1
3,551,482 - -0.3
3,551,519 - -2.3
3,551,519 - -0.2

Or see this region's nucleotide sequence