Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2925 and Shewana3_2926 are separated by 338 nucleotides Shewana3_2926 and Shewana3_2927 are separated by 37 nucleotides
Shewana3_2925: Shewana3_2925 - hypothetical protein (RefSeq), at 3,506,206 to 3,506,727
_2925
Shewana3_2926: Shewana3_2926 - extracellular solute-binding protein (RefSeq), at 3,507,066 to 3,507,842
_2926
Shewana3_2927: Shewana3_2927 - cobalamin synthesis protein, P47K (RefSeq), at 3,507,880 to 3,508,992
_2927
Position (kb)
3507
3508 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3506.097 kb on + strand at 3506.265 kb on - strand, within Shewana3_2925 at 3506.287 kb on + strand, within Shewana3_2925 at 3506.506 kb on - strand, within Shewana3_2925 at 3506.519 kb on + strand, within Shewana3_2925 at 3506.527 kb on - strand, within Shewana3_2925 at 3506.535 kb on - strand, within Shewana3_2925 at 3506.601 kb on - strand, within Shewana3_2925 at 3506.767 kb on + strand at 3506.767 kb on + strand at 3506.781 kb on + strand at 3506.857 kb on - strand at 3506.857 kb on - strand at 3507.141 kb on - strand at 3507.189 kb on + strand, within Shewana3_2926 at 3507.213 kb on + strand, within Shewana3_2926 at 3507.301 kb on - strand, within Shewana3_2926 at 3507.432 kb on - strand, within Shewana3_2926 at 3507.569 kb on - strand, within Shewana3_2926 at 3507.763 kb on + strand, within Shewana3_2926 at 3507.763 kb on + strand, within Shewana3_2926 at 3507.800 kb on + strand at 3508.096 kb on + strand, within Shewana3_2927 at 3508.098 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.355 kb on - strand, within Shewana3_2927 at 3508.355 kb on - strand, within Shewana3_2927 at 3508.427 kb on - strand, within Shewana3_2927 at 3508.596 kb on + strand, within Shewana3_2927 at 3508.680 kb on - strand, within Shewana3_2927
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,506,097 + +1.1 3,506,265 - Shewana3_2925 0.11 +0.7 3,506,287 + Shewana3_2925 0.16 -0.8 3,506,506 - Shewana3_2925 0.57 +0.5 3,506,519 + Shewana3_2925 0.60 -0.6 3,506,527 - Shewana3_2925 0.61 -0.1 3,506,535 - Shewana3_2925 0.63 +1.8 3,506,601 - Shewana3_2925 0.76 +1.3 3,506,767 + -1.7 3,506,767 + -1.1 3,506,781 + +1.2 3,506,857 - +0.5 3,506,857 - +0.3 3,507,141 - -0.2 3,507,189 + Shewana3_2926 0.16 -0.1 3,507,213 + Shewana3_2926 0.19 -0.6 3,507,301 - Shewana3_2926 0.30 +0.0 3,507,432 - Shewana3_2926 0.47 -0.6 3,507,569 - Shewana3_2926 0.65 -1.2 3,507,763 + Shewana3_2926 0.90 -3.2 3,507,763 + Shewana3_2926 0.90 +0.2 3,507,800 + -0.4 3,508,096 + Shewana3_2927 0.19 +0.1 3,508,098 + Shewana3_2927 0.20 -1.9 3,508,347 + Shewana3_2927 0.42 -0.4 3,508,347 + Shewana3_2927 0.42 -2.1 3,508,347 + Shewana3_2927 0.42 +0.6 3,508,347 + Shewana3_2927 0.42 -2.1 3,508,355 - Shewana3_2927 0.43 +0.5 3,508,355 - Shewana3_2927 0.43 +1.3 3,508,427 - Shewana3_2927 0.49 -0.1 3,508,596 + Shewana3_2927 0.64 +0.5 3,508,680 - Shewana3_2927 0.72 +0.8
Or see this region's nucleotide sequence