Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2891 and Shewana3_2892 are separated by 153 nucleotides Shewana3_2892 and Shewana3_2893 are separated by 87 nucleotides Shewana3_2893 and Shewana3_2894 overlap by 20 nucleotides
Shewana3_2891: Shewana3_2891 - putative RNA 2'-O-ribose methyltransferase (RefSeq), at 3,461,304 to 3,462,389
_2891
Shewana3_2892: Shewana3_2892 - hypothetical protein (RefSeq), at 3,462,543 to 3,462,935
_2892
Shewana3_2893: Shewana3_2893 - hypothetical protein (RefSeq), at 3,463,023 to 3,463,694
_2893
Shewana3_2894: Shewana3_2894 - DNA-binding transcriptional activator GcvA (RefSeq), at 3,463,675 to 3,464,586
_2894
Position (kb)
3462
3463 Strain fitness (log2 ratio)
-1
0
1 at 3462.079 kb on + strand, within Shewana3_2891 at 3462.140 kb on - strand, within Shewana3_2891 at 3462.518 kb on + strand at 3462.611 kb on - strand, within Shewana3_2892 at 3462.665 kb on + strand, within Shewana3_2892 at 3462.665 kb on + strand, within Shewana3_2892 at 3462.681 kb on - strand, within Shewana3_2892 at 3463.005 kb on - strand at 3463.188 kb on - strand, within Shewana3_2893 at 3463.379 kb on - strand, within Shewana3_2893 at 3463.390 kb on + strand, within Shewana3_2893 at 3463.392 kb on - strand, within Shewana3_2893 at 3463.392 kb on - strand, within Shewana3_2893 at 3463.392 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.406 kb on + strand, within Shewana3_2893 at 3463.414 kb on - strand, within Shewana3_2893 at 3463.461 kb on - strand, within Shewana3_2893 at 3463.513 kb on - strand, within Shewana3_2893
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,462,079 + Shewana3_2891 0.71 -0.1 3,462,140 - Shewana3_2891 0.77 +0.8 3,462,518 + -1.5 3,462,611 - Shewana3_2892 0.17 +1.0 3,462,665 + Shewana3_2892 0.31 -1.3 3,462,665 + Shewana3_2892 0.31 +1.2 3,462,681 - Shewana3_2892 0.35 +0.5 3,463,005 - +0.2 3,463,188 - Shewana3_2893 0.25 -0.4 3,463,379 - Shewana3_2893 0.53 -0.3 3,463,390 + Shewana3_2893 0.55 -1.4 3,463,392 - Shewana3_2893 0.55 +0.0 3,463,392 - Shewana3_2893 0.55 -0.6 3,463,392 - Shewana3_2893 0.55 +0.1 3,463,398 - Shewana3_2893 0.56 +0.5 3,463,398 - Shewana3_2893 0.56 -0.4 3,463,398 - Shewana3_2893 0.56 -1.5 3,463,398 - Shewana3_2893 0.56 +0.9 3,463,398 - Shewana3_2893 0.56 -1.3 3,463,406 + Shewana3_2893 0.57 -1.0 3,463,414 - Shewana3_2893 0.58 +0.4 3,463,461 - Shewana3_2893 0.65 -0.1 3,463,513 - Shewana3_2893 0.73 +0.1
Or see this region's nucleotide sequence