Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2880 and rdgC are separated by 292 nucleotides rdgC and Shewana3_2882 are separated by 216 nucleotides
Shewana3_2880: Shewana3_2880 - porin (RefSeq), at 3,444,500 to 3,445,444
_2880
Shewana3_2881: rdgC - recombination associated protein (RefSeq), at 3,445,737 to 3,446,651
rdgC
Shewana3_2882: Shewana3_2882 - peptidase M61 domain-containing protein (RefSeq), at 3,446,868 to 3,448,679
_2882
Position (kb)
3445
3446
3447 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3444.806 kb on - strand, within Shewana3_2880 at 3444.907 kb on + strand, within Shewana3_2880 at 3444.955 kb on - strand, within Shewana3_2880 at 3445.040 kb on - strand, within Shewana3_2880 at 3445.054 kb on - strand, within Shewana3_2880 at 3445.088 kb on - strand, within Shewana3_2880 at 3445.223 kb on + strand, within Shewana3_2880 at 3445.229 kb on - strand, within Shewana3_2880 at 3445.374 kb on + strand at 3445.676 kb on + strand at 3445.676 kb on + strand at 3445.843 kb on + strand, within rdgC at 3445.843 kb on + strand, within rdgC at 3445.851 kb on - strand, within rdgC at 3445.897 kb on - strand, within rdgC at 3446.089 kb on + strand, within rdgC at 3446.120 kb on + strand, within rdgC at 3446.210 kb on - strand, within rdgC at 3446.289 kb on + strand, within rdgC at 3446.289 kb on + strand, within rdgC at 3446.289 kb on + strand, within rdgC at 3446.297 kb on - strand, within rdgC at 3446.413 kb on + strand, within rdgC at 3446.612 kb on + strand at 3446.629 kb on + strand at 3446.637 kb on - strand at 3446.666 kb on + strand at 3446.675 kb on + strand at 3446.675 kb on + strand at 3447.224 kb on - strand, within Shewana3_2882 at 3447.380 kb on + strand, within Shewana3_2882 at 3447.410 kb on - strand, within Shewana3_2882 at 3447.423 kb on - strand, within Shewana3_2882 at 3447.430 kb on + strand, within Shewana3_2882 at 3447.454 kb on + strand, within Shewana3_2882 at 3447.570 kb on - strand, within Shewana3_2882 at 3447.575 kb on + strand, within Shewana3_2882 at 3447.575 kb on + strand, within Shewana3_2882 at 3447.583 kb on - strand, within Shewana3_2882 at 3447.616 kb on + strand, within Shewana3_2882
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,444,806 - Shewana3_2880 0.32 +1.4 3,444,907 + Shewana3_2880 0.43 -0.1 3,444,955 - Shewana3_2880 0.48 +0.1 3,445,040 - Shewana3_2880 0.57 +1.2 3,445,054 - Shewana3_2880 0.59 +0.2 3,445,088 - Shewana3_2880 0.62 +0.2 3,445,223 + Shewana3_2880 0.77 -1.6 3,445,229 - Shewana3_2880 0.77 +0.3 3,445,374 + -0.3 3,445,676 + -2.3 3,445,676 + +0.0 3,445,843 + rdgC Shewana3_2881 0.12 -0.6 3,445,843 + rdgC Shewana3_2881 0.12 +0.1 3,445,851 - rdgC Shewana3_2881 0.12 -1.7 3,445,897 - rdgC Shewana3_2881 0.17 -1.9 3,446,089 + rdgC Shewana3_2881 0.38 +0.0 3,446,120 + rdgC Shewana3_2881 0.42 +0.7 3,446,210 - rdgC Shewana3_2881 0.52 -0.8 3,446,289 + rdgC Shewana3_2881 0.60 +1.0 3,446,289 + rdgC Shewana3_2881 0.60 +0.8 3,446,289 + rdgC Shewana3_2881 0.60 +1.0 3,446,297 - rdgC Shewana3_2881 0.61 -0.8 3,446,413 + rdgC Shewana3_2881 0.74 +0.4 3,446,612 + +0.8 3,446,629 + +1.0 3,446,637 - +0.2 3,446,666 + +1.0 3,446,675 + +0.4 3,446,675 + +1.0 3,447,224 - Shewana3_2882 0.20 +1.4 3,447,380 + Shewana3_2882 0.28 +2.2 3,447,410 - Shewana3_2882 0.30 +0.3 3,447,423 - Shewana3_2882 0.31 +0.5 3,447,430 + Shewana3_2882 0.31 -1.7 3,447,454 + Shewana3_2882 0.32 +0.2 3,447,570 - Shewana3_2882 0.39 +0.4 3,447,575 + Shewana3_2882 0.39 +0.2 3,447,575 + Shewana3_2882 0.39 -1.1 3,447,583 - Shewana3_2882 0.39 +0.9 3,447,616 + Shewana3_2882 0.41 -1.9
Or see this region's nucleotide sequence