Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2832

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2829 and Shewana3_2830 are separated by 144 nucleotidesShewana3_2830 and Shewana3_2831 are separated by 49 nucleotidesShewana3_2831 and Shewana3_2832 are separated by 147 nucleotidesShewana3_2832 and Shewana3_2833 overlap by 1 nucleotidesShewana3_2833 and Shewana3_2834 are separated by 107 nucleotides Shewana3_2829: Shewana3_2829 - GCN5-related N-acetyltransferase (RefSeq), at 3,377,964 to 3,378,602 _2829 Shewana3_2830: Shewana3_2830 - hypothetical protein (RefSeq), at 3,378,747 to 3,378,980 _2830 Shewana3_2831: Shewana3_2831 - hypothetical protein (RefSeq), at 3,379,030 to 3,379,428 _2831 Shewana3_2832: Shewana3_2832 - hypothetical protein (RefSeq), at 3,379,576 to 3,379,959 _2832 Shewana3_2833: Shewana3_2833 - hypothetical protein (RefSeq), at 3,379,959 to 3,380,732 _2833 Shewana3_2834: Shewana3_2834 - SecY interacting protein Syd (RefSeq), at 3,380,840 to 3,381,385 _2834 Position (kb) 3379 3380Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3378.934 kb on + strand, within Shewana3_2830at 3378.991 kb on - strandat 3379.057 kb on - strandat 3379.071 kb on - strand, within Shewana3_2831at 3379.105 kb on - strand, within Shewana3_2831at 3379.251 kb on + strand, within Shewana3_2831at 3379.259 kb on - strand, within Shewana3_2831at 3379.365 kb on + strand, within Shewana3_2831at 3379.615 kb on + strand, within Shewana3_2832at 3379.640 kb on + strand, within Shewana3_2832at 3379.827 kb on + strand, within Shewana3_2832at 3379.954 kb on + strandat 3380.059 kb on + strand, within Shewana3_2833at 3380.245 kb on + strand, within Shewana3_2833at 3380.253 kb on - strand, within Shewana3_2833at 3380.255 kb on + strand, within Shewana3_2833at 3380.255 kb on + strand, within Shewana3_2833at 3380.263 kb on - strand, within Shewana3_2833at 3380.263 kb on - strand, within Shewana3_2833at 3380.309 kb on - strand, within Shewana3_2833at 3380.641 kb on + strand, within Shewana3_2833

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,378,934 + Shewana3_2830 0.80 +0.3
3,378,991 - +0.6
3,379,057 - +0.2
3,379,071 - Shewana3_2831 0.10 +0.1
3,379,105 - Shewana3_2831 0.19 +0.7
3,379,251 + Shewana3_2831 0.55 +2.3
3,379,259 - Shewana3_2831 0.57 -0.4
3,379,365 + Shewana3_2831 0.84 -2.8
3,379,615 + Shewana3_2832 0.10 -2.3
3,379,640 + Shewana3_2832 0.17 +0.4
3,379,827 + Shewana3_2832 0.65 -0.6
3,379,954 + -0.1
3,380,059 + Shewana3_2833 0.13 +0.8
3,380,245 + Shewana3_2833 0.37 +0.1
3,380,253 - Shewana3_2833 0.38 +0.8
3,380,255 + Shewana3_2833 0.38 -1.0
3,380,255 + Shewana3_2833 0.38 -1.3
3,380,263 - Shewana3_2833 0.39 +0.5
3,380,263 - Shewana3_2833 0.39 +1.3
3,380,309 - Shewana3_2833 0.45 -2.1
3,380,641 + Shewana3_2833 0.88 -0.0

Or see this region's nucleotide sequence