Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapD and Shewana3_2819 are separated by 268 nucleotides Shewana3_2819 and Shewana3_2820 are separated by 74 nucleotides
Shewana3_2818: dapD - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (RefSeq), at 3,366,292 to 3,367,116
dapD
Shewana3_2819: Shewana3_2819 - hypothetical protein (RefSeq), at 3,367,385 to 3,367,738
_2819
Shewana3_2820: Shewana3_2820 - metal dependent phosphohydrolase (RefSeq), at 3,367,813 to 3,369,741
_2820
Position (kb)
3367
3368 Strain fitness (log2 ratio)
-2
-1
0
1 at 3367.265 kb on - strand at 3367.279 kb on + strand at 3367.426 kb on - strand, within Shewana3_2819 at 3367.431 kb on + strand, within Shewana3_2819 at 3367.439 kb on - strand, within Shewana3_2819 at 3367.589 kb on + strand, within Shewana3_2819 at 3367.675 kb on - strand, within Shewana3_2819 at 3367.763 kb on - strand at 3367.795 kb on - strand at 3367.802 kb on - strand at 3367.961 kb on - strand at 3368.251 kb on - strand, within Shewana3_2820 at 3368.357 kb on - strand, within Shewana3_2820 at 3368.390 kb on - strand, within Shewana3_2820 at 3368.390 kb on - strand, within Shewana3_2820 at 3368.600 kb on - strand, within Shewana3_2820 at 3368.621 kb on + strand, within Shewana3_2820
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,367,265 - -0.1 3,367,279 + -0.3 3,367,426 - Shewana3_2819 0.12 -0.6 3,367,431 + Shewana3_2819 0.13 -2.2 3,367,439 - Shewana3_2819 0.15 -1.0 3,367,589 + Shewana3_2819 0.58 +0.0 3,367,675 - Shewana3_2819 0.82 -0.3 3,367,763 - -0.7 3,367,795 - -0.6 3,367,802 - -1.0 3,367,961 - -1.9 3,368,251 - Shewana3_2820 0.23 +0.5 3,368,357 - Shewana3_2820 0.28 -0.9 3,368,390 - Shewana3_2820 0.30 +0.6 3,368,390 - Shewana3_2820 0.30 -0.0 3,368,600 - Shewana3_2820 0.41 +0.9 3,368,621 + Shewana3_2820 0.42 +0.7
Or see this region's nucleotide sequence