Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2783 and Shewana3_2784 are separated by 73 nucleotides Shewana3_2784 and Shewana3_2785 are separated by 93 nucleotides Shewana3_2785 and Shewana3_2786 are separated by 118 nucleotides
Shewana3_2783: Shewana3_2783 - UDP-galactose 4-epimerase (RefSeq), at 3,322,413 to 3,323,426
_2783
Shewana3_2784: Shewana3_2784 - ferredoxin-type protein NapF (RefSeq), at 3,323,500 to 3,323,985
_2784
Shewana3_2785: Shewana3_2785 - hypothetical protein (RefSeq), at 3,324,079 to 3,324,522
_2785
Shewana3_2786: Shewana3_2786 - LysR family transcriptional regulator (RefSeq), at 3,324,641 to 3,325,654
_2786
Position (kb)
3323
3324 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3322.658 kb on + strand, within Shewana3_2783 at 3322.791 kb on + strand, within Shewana3_2783 at 3323.199 kb on + strand, within Shewana3_2783 at 3323.248 kb on + strand, within Shewana3_2783 at 3323.525 kb on + strand at 3323.533 kb on + strand at 3323.727 kb on + strand, within Shewana3_2784 at 3323.735 kb on - strand, within Shewana3_2784 at 3324.007 kb on - strand at 3324.019 kb on + strand at 3324.031 kb on + strand at 3324.106 kb on - strand at 3324.129 kb on - strand, within Shewana3_2785 at 3324.214 kb on - strand, within Shewana3_2785 at 3324.214 kb on - strand, within Shewana3_2785 at 3324.330 kb on + strand, within Shewana3_2785 at 3324.408 kb on + strand, within Shewana3_2785 at 3324.538 kb on + strand at 3324.539 kb on + strand at 3324.555 kb on - strand at 3324.608 kb on - strand at 3324.687 kb on - strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.717 kb on + strand at 3324.818 kb on + strand, within Shewana3_2786 at 3324.890 kb on + strand, within Shewana3_2786
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,322,658 + Shewana3_2783 0.24 +1.8 3,322,791 + Shewana3_2783 0.37 +1.9 3,323,199 + Shewana3_2783 0.78 +1.9 3,323,248 + Shewana3_2783 0.82 +0.8 3,323,525 + -2.5 3,323,533 + +0.8 3,323,727 + Shewana3_2784 0.47 -2.2 3,323,735 - Shewana3_2784 0.48 -0.3 3,324,007 - +2.4 3,324,019 + -1.3 3,324,031 + +2.4 3,324,106 - -1.1 3,324,129 - Shewana3_2785 0.11 +0.3 3,324,214 - Shewana3_2785 0.30 +0.0 3,324,214 - Shewana3_2785 0.30 -0.4 3,324,330 + Shewana3_2785 0.57 -0.0 3,324,408 + Shewana3_2785 0.74 -0.1 3,324,538 + -1.2 3,324,539 + +0.4 3,324,555 - +0.8 3,324,608 - +0.8 3,324,687 - +0.4 3,324,717 + +0.0 3,324,717 + +0.8 3,324,717 + +0.5 3,324,717 + +0.8 3,324,717 + +0.4 3,324,818 + Shewana3_2786 0.17 +0.2 3,324,890 + Shewana3_2786 0.25 -2.3
Or see this region's nucleotide sequence